Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CA901_RS08505 Genome accession   NZ_CP042893
Coordinates   1793139..1794566 (-) Length   475 a.a.
NCBI ID   WP_000980581.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN061772     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1788139..1799566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA901_RS08475 (CA901_008465) yeeZ 1788194..1789018 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  CA901_RS08480 (CA901_008470) yeeY 1789064..1789993 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  CA901_RS08485 (CA901_008475) yoeI 1790208..1790270 (+) 63 WP_010723108.1 membrane protein YoeI -
  CA901_RS08490 (CA901_008480) plaP 1790260..1791618 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CA901_RS08495 (CA901_008485) tsuA 1791797..1792855 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  CA901_RS08500 (CA901_008490) tsuB 1792869..1793096 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CA901_RS08505 (CA901_008495) sbcB 1793139..1794566 (-) 1428 WP_000980581.1 exodeoxyribonuclease I Machinery gene
  CA901_RS08510 (CA901_008500) dacD 1794775..1795941 (+) 1167 WP_116439076.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CA901_RS08515 (CA901_008505) sbmC 1796060..1796533 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  CA901_RS08520 (CA901_008510) yeeA 1796732..1797790 (+) 1059 WP_001200891.1 FUSC family protein -
  CA901_RS08525 (CA901_008515) tmaR 1797962..1798291 (+) 330 WP_000450409.1 DUF496 family protein -
  CA901_RS08530 (CA901_008520) - 1798392..1798574 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CA901_RS08535 (CA901_008525) - 1798637..1798774 (+) 138 Protein_1670 transposase domain-containing protein -
  CA901_RS08540 (CA901_008530) - 1799063..1799155 (-) 93 Protein_1671 DUF957 domain-containing protein -
  CA901_RS08545 (CA901_008535) yeeW 1799189..1799383 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6070

>NTDB_id=332643 CA901_RS08505 WP_000980581.1 1793139..1794566(-) (sbcB) [Escherichia coli strain CFSAN061772]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=332643 CA901_RS08505 WP_000980581.1 1793139..1794566(-) (sbcB) [Escherichia coli strain CFSAN061772]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579