Detailed information NTG0332630

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CA901_RS04965
• Genome accession: NZ_CP042893
• Coordinates: 1027589..1028581 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CFSAN061772
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1022589..1033581

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA901_RS04935 (CA901_004940)	ispD	1022650..1023360 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CA901_RS04940 (CA901_004945)	ispF	1023360..1023839 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CA901_RS04945 (CA901_004950)	truD	1023836..1024885 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CA901_RS04950 (CA901_004955)	surE	1024866..1025627 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CA901_RS04955 (CA901_004960)	pcm	1025621..1026247 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CA901_RS04960 (CA901_004965)	nlpD	1026432..1027526 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CA901_RS04965 (CA901_004970)	rpoS	1027589..1028581 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CA901_RS04970 (CA901_004975)	ygbN	1028675..1030039 (-)	1365	WP_000104441.1	GntP family transporter	-
CA901_RS04975 (CA901_004980)	ygbM	1030128..1030904 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
CA901_RS04980 (CA901_004985)	ygbL	1030909..1031547 (-)	639	WP_001278994.1	aldolase	-
CA901_RS04985 (CA901_004990)	otnK	1031544..1032806 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=332630 CA901_RS04965 WP_000081550.1 1027589..1028581(+) (rpoS) [Escherichia coli strain CFSAN061772]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=332630 CA901_RS04965 WP_000081550.1 1027589..1028581(+) (rpoS) [Escherichia coli strain CFSAN061772]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715