Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL009_RS14755 Genome accession   NZ_CP034697
Coordinates   2948185..2948790 (-) Length   201 a.a.
NCBI ID   WP_001202379.1    Uniprot ID   A0A734HUC9
Organism   Salmonella enterica subsp. salamae serovar 42:r:- strain RSE42     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2943185..2953790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL009_RS14740 (EL009_14740) helD 2943402..2945456 (-) 2055 WP_127174340.1 DNA helicase IV -
  EL009_RS14745 (EL009_14745) - 2945580..2946026 (+) 447 WP_001261216.1 YccF domain-containing protein -
  EL009_RS14750 (EL009_14750) yccS 2946045..2948198 (+) 2154 WP_023177838.1 YccS family putative transporter -
  EL009_RS14755 (EL009_14755) sxy/tfoX 2948185..2948790 (-) 606 WP_001202379.1 TfoX/Sxy family DNA transformation protein Regulator
  EL009_RS14760 (EL009_14760) sulA 2949007..2949516 (+) 510 WP_000288728.1 SOS-induced cell division inhibitor SulA -
  EL009_RS14765 (EL009_14765) ompA 2949873..2950925 (+) 1053 WP_023177836.1 porin OmpA -
  EL009_RS14770 (EL009_14770) matP 2950997..2951449 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  EL009_RS14775 (EL009_14775) - 2951635..2953395 (+) 1761 WP_127174341.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23160.85 Da        Isoelectric Point: 8.7403

>NTDB_id=332613 EL009_RS14755 WP_001202379.1 2948185..2948790(-) (sxy/tfoX) [Salmonella enterica subsp. salamae serovar 42:r:- strain RSE42]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRTLGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=332613 EL009_RS14755 WP_001202379.1 2948185..2948790(-) (sxy/tfoX) [Salmonella enterica subsp. salamae serovar 42:r:- strain RSE42]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTATTGTGTGAAGCATCCCCCCGTCTGGCTCACGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAACACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCACACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAGAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCGTTAGAAGGCGCAATTGTGGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A734HUC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.382

99.005

0.756

Multiple sequence alignment