Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FVP48_RS25015 Genome accession   NZ_CP042892
Coordinates   4704537..4705964 (-) Length   475 a.a.
NCBI ID   WP_112022310.1    Uniprot ID   -
Organism   Escherichia coli O10:H32 strain NMBU-W12E19     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4699537..4710964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVP48_RS24985 (FVP48_25680) yeeZ 4699592..4700416 (+) 825 WP_032175485.1 SDR family oxidoreductase -
  FVP48_RS24990 (FVP48_25685) yeeY 4700462..4701391 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  FVP48_RS24995 (FVP48_25690) yoeI 4701606..4701668 (+) 63 WP_010723108.1 membrane protein YoeI -
  FVP48_RS25000 (FVP48_25695) plaP 4701658..4703016 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FVP48_RS25005 (FVP48_25700) tsuA 4703195..4704253 (+) 1059 WP_118020298.1 thiosulfate utilization transporter TsuA/YeeE -
  FVP48_RS25010 (FVP48_25705) tsuB 4704267..4704494 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FVP48_RS25015 (FVP48_25710) sbcB 4704537..4705964 (-) 1428 WP_112022310.1 exodeoxyribonuclease I Machinery gene
  FVP48_RS25020 (FVP48_25715) dacD 4706173..4707339 (+) 1167 WP_173002359.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FVP48_RS25025 (FVP48_25720) sbmC 4707458..4707931 (+) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  FVP48_RS25030 (FVP48_25725) yeeA 4708130..4709188 (+) 1059 WP_001200891.1 FUSC family protein -
  FVP48_RS25035 (FVP48_25730) tmaR 4709360..4709689 (+) 330 WP_000450409.1 DUF496 family protein -
  FVP48_RS25040 (FVP48_25735) - 4709790..4710155 (-) 366 WP_001280456.1 EutP/PduV family microcompartment system protein -
  FVP48_RS25045 (FVP48_25745) istB 4710246..4710935 (-) 690 Protein_4489 IS21-like element IS100kyp family helper ATPase IstB -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54515.79 Da        Isoelectric Point: 5.4700

>NTDB_id=332604 FVP48_RS25015 WP_112022310.1 4704537..4705964(-) (sbcB) [Escherichia coli O10:H32 strain NMBU-W12E19]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRTCYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=332604 FVP48_RS25015 WP_112022310.1 4704537..4705964(-) (sbcB) [Escherichia coli O10:H32 strain NMBU-W12E19]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTACCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581