Detailed information NTG0332591

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FVP48_RS21205
• Genome accession: NZ_CP042892
• Coordinates: 3877770..3878762 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O10:H32 strain NMBU-W12E19
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3872770..3883762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FVP48_RS21175 (FVP48_21850)	ispD	3872831..3873541 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FVP48_RS21180 (FVP48_21855)	ispF	3873541..3874020 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FVP48_RS21185 (FVP48_21860)	truD	3874017..3875066 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FVP48_RS21190 (FVP48_21865)	surE	3875047..3875808 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FVP48_RS21195 (FVP48_21870)	pcm	3875802..3876428 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FVP48_RS21200 (FVP48_21875)	nlpD	3876613..3877707 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FVP48_RS21205 (FVP48_21880)	rpoS	3877770..3878762 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FVP48_RS21210 (FVP48_21885)	ygbN	3878856..3880220 (-)	1365	WP_000104441.1	GntP family transporter	-
FVP48_RS21215 (FVP48_21890)	ygbM	3880309..3881085 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
FVP48_RS21220 (FVP48_21895)	ygbL	3881090..3881728 (-)	639	WP_001278994.1	aldolase	-
FVP48_RS21225 (FVP48_21900)	otnK	3881725..3882987 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=332591 FVP48_RS21205 WP_000081550.1 3877770..3878762(+) (rpoS) [Escherichia coli O10:H32 strain NMBU-W12E19]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=332591 FVP48_RS21205 WP_000081550.1 3877770..3878762(+) (rpoS) [Escherichia coli O10:H32 strain NMBU-W12E19]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715