Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ELR50_RS21775 Genome accession   NZ_CP034688
Coordinates   4899570..4900943 (+) Length   457 a.a.
NCBI ID   WP_009613141.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain WXP-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4894570..4905943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELR50_RS21750 (ELR50_21690) - 4895769..4896545 (+) 777 WP_043268867.1 ferredoxin--NADP reductase -
  ELR50_RS21755 (ELR50_21695) - 4896737..4898290 (+) 1554 WP_269962296.1 TerC family protein -
  ELR50_RS21760 (ELR50_21700) mscL 4898308..4898721 (-) 414 WP_043268871.1 large-conductance mechanosensitive channel protein MscL -
  ELR50_RS21765 (ELR50_21705) - 4898912..4899154 (+) 243 WP_269962297.1 YdcH family protein -
  ELR50_RS21770 (ELR50_21710) - 4899232..4899474 (+) 243 WP_043268874.1 hypothetical protein -
  ELR50_RS21775 (ELR50_21715) radA 4899570..4900943 (+) 1374 WP_009613141.1 DNA repair protein RadA Machinery gene
  ELR50_RS21780 (ELR50_21720) - 4901503..4901874 (-) 372 WP_009613140.1 PilZ domain-containing protein -
  ELR50_RS21785 (ELR50_21725) - 4902293..4904359 (+) 2067 WP_009613139.1 carbon starvation CstA family protein -
  ELR50_RS21790 (ELR50_21730) - 4904375..4904578 (+) 204 WP_269962298.1 YbdD/YjiX family protein -
  ELR50_RS21795 (ELR50_21735) yjiA 4904654..4905634 (+) 981 WP_043268876.1 GTPase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48893.28 Da        Isoelectric Point: 6.8983

>NTDB_id=332555 ELR50_RS21775 WP_009613141.1 4899570..4900943(+) (radA) [Pseudomonas citronellolis strain WXP-4]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVDTTPTGGSGSSGRGGWAGQQANIKTLAEVSVEEMPRFSTASN
ELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIANRMPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIESI
IATARHEQPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLY
FEGESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQESVPGSVVMATWEGSRPMLVEVQALVDTSH
LANPRRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLDHQLLVFGEVGL
SGEVRPVPSGQERLKEAAKHGFKRAIVPQGNAPKEAPPGLQVIPVTRLEQALDALFE

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=332555 ELR50_RS21775 WP_009613141.1 4899570..4900943(+) (radA) [Pseudomonas citronellolis strain WXP-4]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCCACCTTCCCCAAATGGGCCGGCCAGTGCGCCGACTG
CGGCGCCTGGAACACCCTGGTGGAGACCGTCGTCGACACCACGCCCACCGGTGGCTCCGGCAGTTCCGGACGCGGCGGCT
GGGCCGGGCAGCAGGCCAACATCAAGACCCTGGCGGAAGTCAGCGTCGAGGAGATGCCGCGCTTCAGCACCGCCTCCAAC
GAACTCGACCGCGTCCTCGGCGGAGGCCTGGTGGACGGCTCCGTCGTGCTCATCGGCGGCGACCCCGGCATCGGCAAGTC
GACCATCCTCCTGCAGACCCTGTGCAGCATCGCCAACCGCATGCCGGCGCTCTACGTCACCGGCGAAGAGTCGCAGCAGC
AGGTGGCCATGCGCGCGCGGCGCCTGGGCCTGCCGGAAGACAAGCTCAAGGTCATGACCGAGACCTGCATAGAAAGCATC
ATCGCCACTGCTCGCCACGAGCAGCCCAAGGTGATGGTGATCGACTCCATCCAGACCATCTTCACCGAACAGCTGCAATC
GGCCCCCGGCGGCGTCGCCCAGGTGCGCGAGAGCGCCGCGTTGCTGGTGCGCTTCGCCAAGCAGAGCGGCACGGCGATCT
TCCTGGTCGGCCACGTCACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTGGAGCACATGGTCGACACCGTGCTGTAT
TTCGAGGGCGAGTCCGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGT
GTTCGCCATGACCGACCGTGGCCTGAAGGAGGTCTCCAACCCTTCGGCGATCTTCCTCACCCGCGCCCAGGAATCGGTGC
CCGGCAGCGTGGTCATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTGCAGGCGCTGGTCGACACCAGCCAC
CTGGCCAACCCGCGGCGCGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGCCACGG
CGGCATCCCCACCTATGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTGAAGGTGCTGGAAACCGCGTCGGACCTGG
CGCTGATGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCGCTGGATCATCAACTGCTGGTGTTCGGCGAGGTCGGCCTG
TCCGGCGAGGTGCGCCCGGTGCCCAGCGGCCAGGAACGCCTGAAGGAAGCCGCCAAGCACGGCTTCAAGCGCGCCATCGT
GCCCCAGGGCAACGCCCCCAAGGAAGCCCCGCCGGGACTGCAGGTGATCCCGGTGACGCGCCTGGAGCAGGCGCTGGATG
CGTTGTTCGAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-223)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.458

99.344

0.481
  radA Streptococcus pneumoniae Rx1

45.987

100

0.464
  radA Streptococcus pneumoniae R6

45.987

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.987

100

0.464
  radA Streptococcus pneumoniae D39

45.987

100

0.464
  radA Streptococcus mitis SK321

46.171

100

0.462
  radA Streptococcus mitis NCTC 12261

45.952

100

0.46

Multiple sequence alignment