Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ELR50_RS06245 Genome accession   NZ_CP034688
Coordinates   1491986..1492531 (-) Length   181 a.a.
NCBI ID   WP_269963497.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain WXP-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1486986..1497531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELR50_RS06235 (ELR50_06185) - 1490670..1491212 (-) 543 WP_269963495.1 pilus assembly PilX family protein -
  ELR50_RS06240 (ELR50_06190) - 1491209..1491985 (-) 777 WP_269963496.1 PilW family protein -
  ELR50_RS06245 (ELR50_06195) pilV 1491986..1492531 (-) 546 WP_269963497.1 type IV pilus modification protein PilV Machinery gene
  ELR50_RS06250 (ELR50_06200) - 1492528..1493031 (-) 504 WP_269963498.1 GspH/FimT family pseudopilin -
  ELR50_RS06255 (ELR50_06205) - 1493512..1494861 (-) 1350 WP_269963499.1 MFS transporter -
  ELR50_RS06260 (ELR50_06210) - 1495040..1495882 (-) 843 WP_043266799.1 IclR family transcriptional regulator domain-containing protein -
  ELR50_RS06265 (ELR50_06215) - 1496155..1497240 (+) 1086 WP_043316294.1 type I restriction endonuclease -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18978.65 Da        Isoelectric Point: 5.1557

>NTDB_id=332531 ELR50_RS06245 WP_269963497.1 1491986..1492531(-) (pilV) [Pseudomonas citronellolis strain WXP-4]
MTRRGLAGFSLIEVLVALLVICVGVLGMLAMQGRAIAYSQDMAVRGTAAALADELMETLRTDLYSTQDAGTPLTPPASSD
YYKATGRAFPAAPSSCASLASLSASQRLGCWAQRVQQALPDAASLMSSDFHICRSNGASTCSGTGSAIEIQLAWRVKSGE
CLEASPGSDPTICHYVLREEP

Nucleotide


Download         Length: 546 bp        

>NTDB_id=332531 ELR50_RS06245 WP_269963497.1 1491986..1492531(-) (pilV) [Pseudomonas citronellolis strain WXP-4]
ATGACGCGCCGTGGCCTGGCCGGCTTCAGCCTGATCGAAGTGCTGGTGGCGCTGCTGGTGATCTGCGTCGGCGTGCTGGG
CATGCTCGCCATGCAGGGCAGGGCGATCGCCTATTCCCAGGACATGGCGGTGCGCGGCACGGCGGCAGCCCTGGCCGACG
AGCTGATGGAGACCCTCCGCACCGACCTCTATTCCACCCAGGACGCCGGCACGCCGCTGACCCCGCCGGCCAGCTCCGAC
TACTACAAGGCCACCGGCAGAGCCTTCCCCGCAGCACCGAGCAGTTGTGCCTCGCTCGCTTCTCTGAGCGCCTCGCAGCG
CCTGGGCTGCTGGGCGCAGCGGGTGCAGCAGGCGCTGCCCGATGCCGCCAGCCTGATGAGCAGCGACTTCCACATCTGCC
GCAGCAACGGCGCCAGCACCTGCAGCGGCACCGGCTCGGCCATCGAAATCCAGCTGGCCTGGCGGGTGAAGTCCGGCGAG
TGCCTGGAGGCCAGCCCCGGCAGCGACCCGACCATCTGCCACTACGTGCTGCGCGAGGAGCCCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

48.603

98.895

0.481

Multiple sequence alignment