Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   EKQ63_RS29020 Genome accession   NZ_CP034686
Coordinates   5123676..5124803 (+) Length   375 a.a.
NCBI ID   WP_087955268.1    Uniprot ID   -
Organism   Bacillus sp. BD59S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5118676..5129803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKQ63_RS28990 (EKQ63_28960) spoIIIJ 5118721..5119488 (-) 768 WP_087995274.1 YidC family membrane integrase SpoIIIJ -
  EKQ63_RS28995 (EKQ63_28965) rnpA 5119541..5119888 (-) 348 WP_087995273.1 ribonuclease P protein component -
  EKQ63_RS29000 (EKQ63_28970) rpmH 5119965..5120099 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  EKQ63_RS29005 (EKQ63_28975) dnaA 5120665..5122005 (+) 1341 WP_000428025.1 chromosomal replication initiator protein DnaA -
  EKQ63_RS29010 (EKQ63_28980) dnaN 5122184..5123323 (+) 1140 WP_001212891.1 DNA polymerase III subunit beta -
  EKQ63_RS29015 (EKQ63_28985) yaaA 5123451..5123663 (+) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  EKQ63_RS29020 (EKQ63_28990) recF 5123676..5124803 (+) 1128 WP_087955268.1 DNA replication/repair protein RecF Machinery gene
  EKQ63_RS29025 (EKQ63_28995) gyrB 5124842..5126764 (+) 1923 WP_000435993.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  EKQ63_RS29030 (EKQ63_29000) gyrA 5126853..5129324 (+) 2472 WP_001282851.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43320.59 Da        Isoelectric Point: 6.5996

>NTDB_id=332517 EKQ63_RS29020 WP_087955268.1 5123676..5124803(+) (recF) [Bacillus sp. BD59S]
MFISEIQLKNYRNYENLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=332517 EKQ63_RS29020 WP_087955268.1 5123676..5124803(+) (recF) [Bacillus sp. BD59S]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAATTTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAGAATGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGAAAGCTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGCAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTACAAAAATTTTGCAAAAACGCTTTGAATTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGGCTAGAAGAATTAGAAATTGTCTATAAACCGAGCGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCCGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTCTATTGGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651

Multiple sequence alignment