Detailed information NTG0332511

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: EKQ63_RS27430
• Genome accession: NZ_CP034686
• Coordinates: 4799935..4801284 (-)
• Length: 449 a.a.
• NCBI ID: WP_087955107.1
• Uniprot ID: -
• Organism: Bacillus sp. BD59S
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4794935..4806284

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EKQ63_RS27410 (EKQ63_27390)	secA	4795260..4797767 (-)	2508	WP_143881670.1	preprotein translocase subunit SecA	-
EKQ63_RS27415 (EKQ63_27395)	hpf	4798044..4798586 (-)	543	WP_087955105.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
EKQ63_RS27420 (EKQ63_27400)	cspC	4798907..4799104 (-)	198	WP_001162041.1	cold shock protein CspC	-
EKQ63_RS27425 (EKQ63_27405)	-	4799231..4799935 (-)	705	WP_087955106.1	ComF family protein	-
EKQ63_RS27430 (EKQ63_27410)	comFA	4799935..4801284 (-)	1350	WP_087955107.1	ATP-dependent helicase ComFA	Machinery gene
EKQ63_RS27435 (EKQ63_27415)	-	4801411..4802826 (-)	1416	WP_140421129.1	NlpC/P60 family protein	-
EKQ63_RS27440 (EKQ63_27420)	-	4802973..4803287 (-)	315	WP_000400857.1	winged helix-turn-helix transcriptional regulator	-
EKQ63_RS27445 (EKQ63_27425)	-	4803461..4804303 (-)	843	WP_000844764.1	DegV family protein	-
EKQ63_RS27450 (EKQ63_27430)	-	4804543..4805178 (+)	636	WP_000926682.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51023.67 Da
• Isoelectric Point: 9.8512

>NTDB_id=332511 EKQ63_RS27430 WP_087955107.1 4799935..4801284(-) (comFA) [Bacillus sp. BD59S]
MLAGKQLLLEELSSDLRREISNLKEKGEIVCVQGVIKKASKYICQRCGNIEQRLFASFLCKRCGKACAYCRKCITMGRVS
ECTVLVRGIHERNGDRELNPLQWNGTLSIGQELAAQGVIEAIKQKKSFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVLELAPRLQEVFPSITVAALYGGSVDHKKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVRQAM
KEKAARIYLTATPDEKWKRNFRKGKQKGVIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMNLNKKYPIFL
FVPHVRYVEEMSLLLKGLDNRIDGVHAEDSMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVVYFHYGKTESMVRAKKHIQSMNKNAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=332511 EKQ63_RS27430 WP_087955107.1 4799935..4801284(-) (comFA) [Bacillus sp. BD59S]
ATGCTTGCTGGAAAACAGTTGCTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAAATAAGTAATTTAAAAGAGAAGGG
AGAGATCGTATGTGTGCAAGGTGTAATAAAAAAGGCTTCTAAATATATATGTCAGCGCTGTGGAAATATAGAGCAGCGAC
TATTTGCATCATTTTTATGTAAAAGGTGCGGTAAAGCATGCGCGTATTGCCGGAAGTGTATCACGATGGGGAGAGTTAGT
GAATGTACTGTACTTGTTCGCGGGATCCATGAAAGAAACGGAGACAGGGAGCTAAATCCATTACAGTGGAATGGAACTTT
ATCGATTGGTCAGGAGTTGGCGGCGCAAGGGGTTATAGAAGCGATTAAGCAGAAAAAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGGACGGACGTTGTACTGGAATTAGCGCCGAGATTACAAGAAGTGTTTCCAAGTATAACTGTAGCTGCTTTATACGG
AGGGAGTGTAGATCATAAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCGTTTC
ATGTGATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCGGTGAGGCAAGCGATG
AAAGAGAAAGCGGCGCGTATTTATTTAACAGCAACTCCTGATGAAAAGTGGAAGCGTAATTTCAGAAAGGGGAAACAAAA
AGGTGTTATTGTGTCAGGACGATACCATCGTCACCCGTTACCAGTTCCTCTATTTAGCTGGTGCGGAAATTGGAAGAAAA
GCCTTCATCATAAAAAAATTCCTCGCGTGTTACTACAATGGTTAAAAATGAACTTAAATAAAAAGTATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATGAGCCTGTTATTGAAAGGGTTGGATAATAGAATCGATGGTGTACATGC
AGAAGATTCGATGAGAAAAGAAAAAGTAGCAGCGTTCAGAAAGGGAGAAATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGAGTAACTGTGAAGAACTTACAAGTGGCGGTGCTAGGGGCAGAAGAAGAAATTTTTTCAGAGAGCGCGCTCGTA
CAAATTGCAGGCCGAGCGGGTCGTAGTTTTGAAGAGCCATATGGCGAGGTTGTGTATTTTCATTACGGTAAGACAGAGTC
AATGGTACGTGCGAAAAAACACATTCAAAGTATGAACAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (110-254)

• Helicase conserved C-terminal domain (Helicase_C) (311-408)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	51.351	98.886	0.508
comFA	Latilactobacillus sakei subsp. sakei 23K	40.295	90.646	0.365