Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HICON_RS02465 Genome accession   NC_014922
Coordinates   498039..498692 (-) Length   217 a.a.
NCBI ID   WP_006995324.1    Uniprot ID   -
Organism   Haemophilus influenzae F3047     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 493039..503692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HICON_RS02465 (HICON_07280) sxy/tfoX 498039..498692 (-) 654 WP_006995324.1 DNA transformation protein TfoX Regulator
  HICON_RS02470 (HICON_07290) recA 499065..500129 (+) 1065 WP_005654959.1 recombinase RecA -
  HICON_RS02475 (HICON_07300) recX 500209..500667 (+) 459 WP_006995323.1 recombination regulator RecX -
  HICON_RS02480 (HICON_07310) crcB 500664..501050 (-) 387 WP_005692779.1 fluoride efflux transporter CrcB -
  HICON_RS02485 (HICON_07320) - 501050..501868 (-) 819 WP_006995322.1 Cof-type HAD-IIB family hydrolase -
  HICON_RS02490 - 502271..503276 (+) 1006 Protein_482 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24987.35 Da        Isoelectric Point: 10.0171

>NTDB_id=33250 HICON_RS02465 WP_006995324.1 498039..498692(-) (sxy/tfoX) [Haemophilus influenzae F3047]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQVLRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=33250 HICON_RS02465 WP_006995324.1 498039..498692(-) (sxy/tfoX) [Haemophilus influenzae F3047]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAGCGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGGTTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-107)

TfoX C-terminal domain (TfoX_C)

(121-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991

Multiple sequence alignment