Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EKQ63_RS08115 Genome accession   NZ_CP034686
Coordinates   1197390..1197713 (-) Length   107 a.a.
NCBI ID   WP_000578882.1    Uniprot ID   -
Organism   Bacillus sp. BD59S     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192390..1202713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKQ63_RS08090 (EKQ63_08070) - 1192588..1193874 (+) 1287 WP_087994540.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EKQ63_RS08095 (EKQ63_08075) sipW 1194067..1194636 (+) 570 WP_087951725.1 signal peptidase I SipW -
  EKQ63_RS08100 (EKQ63_08080) - 1194699..1195286 (+) 588 WP_000172849.1 CalY family protein -
  EKQ63_RS08105 (EKQ63_08085) - 1195448..1196200 (+) 753 WP_143880947.1 DUF4047 domain-containing protein -
  EKQ63_RS08110 (EKQ63_08090) calY 1196725..1197318 (+) 594 WP_000053729.1 biofilm matrix protein CalY -
  EKQ63_RS08115 (EKQ63_08095) sinR 1197390..1197713 (-) 324 WP_000578882.1 helix-turn-helix domain-containing protein Regulator
  EKQ63_RS08120 (EKQ63_08100) - 1197793..1197927 (-) 135 WP_000276223.1 anti-repressor SinI family protein -
  EKQ63_RS08125 (EKQ63_08105) inhA1 1198269..1200659 (+) 2391 WP_087951727.1 M6 family metalloprotease immune inhibitor InhA1 -
  EKQ63_RS08130 (EKQ63_08110) - 1200831..1202198 (+) 1368 WP_087994484.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12359.19 Da        Isoelectric Point: 8.5614

>NTDB_id=332485 EKQ63_RS08115 WP_000578882.1 1197390..1197713(-) (sinR) [Bacillus sp. BD59S]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=332485 EKQ63_RS08115 WP_000578882.1 1197390..1197713(-) (sinR) [Bacillus sp. BD59S]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCCGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGCAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAGCTCAGGTGTCTCCAAAGAACAATTTCGTGAGTTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment