Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EKQ63_RS07690 Genome accession   NZ_CP034686
Coordinates   1123642..1125468 (+) Length   608 a.a.
NCBI ID   WP_048553950.1    Uniprot ID   -
Organism   Bacillus sp. BD59S     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1118642..1130468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKQ63_RS07670 (EKQ63_07650) - 1118950..1119624 (-) 675 WP_048553954.1 TerC family protein -
  EKQ63_RS07675 (EKQ63_07655) mecA 1119967..1120650 (+) 684 WP_000350710.1 adaptor protein MecA Regulator
  EKQ63_RS07680 (EKQ63_07660) - 1120723..1122267 (+) 1545 WP_000799204.1 cardiolipin synthase -
  EKQ63_RS07685 (EKQ63_07665) - 1122347..1123591 (+) 1245 WP_143880933.1 competence protein CoiA -
  EKQ63_RS07690 (EKQ63_07670) pepF 1123642..1125468 (+) 1827 WP_048553950.1 oligoendopeptidase F Regulator
  EKQ63_RS29845 - 1125586..1125759 (-) 174 WP_000754592.1 hypothetical protein -
  EKQ63_RS07695 (EKQ63_07675) - 1125989..1126882 (-) 894 WP_087951667.1 ClpXP adapter SpxH family protein -
  EKQ63_RS07700 (EKQ63_07680) - 1126882..1127280 (-) 399 WP_087951668.1 globin -
  EKQ63_RS07705 (EKQ63_07685) - 1127461..1128039 (-) 579 WP_087951669.1 CYTH domain-containing protein -
  EKQ63_RS07710 (EKQ63_07690) - 1128186..1128557 (+) 372 WP_048553937.1 hypothetical protein -
  EKQ63_RS07715 (EKQ63_07695) - 1128588..1129226 (+) 639 WP_001081482.1 GTP pyrophosphokinase family protein -
  EKQ63_RS07720 (EKQ63_07700) - 1129245..1130042 (+) 798 WP_000673185.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70290.52 Da        Isoelectric Point: 4.6198

>NTDB_id=332484 EKQ63_RS07690 WP_048553950.1 1123642..1125468(+) (pepF) [Bacillus sp. BD59S]
MSEQNTAKTLPDRNEIEESSTWRLEDIFQTDAEWEQEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=332484 EKQ63_RS07690 WP_048553950.1 1123642..1125468(+) (pepF) [Bacillus sp. BD59S]
ATGTCTGAACAAAACACAGCAAAAACATTACCAGATCGTAACGAGATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAACAAGAATTCCAAGCTATTAAAGAGTTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGACCGCGCGACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTGCAAACATTCTTGA
AAGAAAATAGAGACTTAAGTGTATATGAACATGCATTAGAAGAAATTACGCGCCAACGTCCGCACGTATTATCTGAAGCG
GAAGAGGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGCATGTTGAATAATGCGGATTT
GAAATTTCCATCTATTAAAGGTGAGGATGGAGAAGAAGTAGAAATCACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGCGAAGATGCGTTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGTACG
TTAAGCGGAGCTGTAAAGCGTAATAATTTTAATGCACGCGTTCGTAAATATGACTCTGCACGTCAAGCAGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTACGATCAACTCGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAGTATGAAGAAGCGCAAGACATGTTATTAAAGTCTTTACATGTACTTGGTGATGAGTATGTTGATATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCTTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAATTTGGCCATTCT
GTCCATAGTTACTACACAAGAAAAACGCAGCCGCACGTATACGGTGACTATTCAATCTTCGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCGCTTCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAGGGACATGCGGTAACGCCAGACATGTTAACGGAGATCTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATTGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACGGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCAGATTATCCAATTGAAGTGCTGAAGAAAGCTGGAGTAGATATGGCATCTCCAGAACCAGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.253

97.533

0.49

Multiple sequence alignment