Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EKQ63_RS01995 Genome accession   NZ_CP034686
Coordinates   21912..22196 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus sp. BD59S     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 16912..27196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKQ63_RS01960 (EKQ63_01960) tmk 17066..17692 (+) 627 WP_143880695.1 dTMP kinase -
  EKQ63_RS01965 (EKQ63_01965) holB 17728..18711 (+) 984 WP_143880696.1 DNA polymerase III subunit delta' -
  EKQ63_RS01970 (EKQ63_01970) - 18717..19544 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  EKQ63_RS01975 (EKQ63_01975) yabA 19559..19909 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  EKQ63_RS01980 (EKQ63_01980) - 20030..20770 (+) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  EKQ63_RS01985 (EKQ63_01985) - 20757..21047 (+) 291 WP_048526382.1 GIY-YIG nuclease family protein -
  EKQ63_RS01990 (EKQ63_01990) rsmI 21016..21891 (+) 876 WP_048552623.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EKQ63_RS01995 (EKQ63_01995) abrB 21912..22196 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EKQ63_RS02000 (EKQ63_02000) metG 22714..24696 (+) 1983 WP_087997345.1 methionine--tRNA ligase -
  EKQ63_RS02005 (EKQ63_02005) - 24863..25630 (+) 768 WP_087951390.1 TatD family hydrolase -
  EKQ63_RS02010 (EKQ63_02010) rnmV 25845..26402 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=332471 EKQ63_RS01995 WP_000843036.1 21912..22196(-) (abrB) [Bacillus sp. BD59S]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=332471 EKQ63_RS01995 WP_000843036.1 21912..22196(-) (abrB) [Bacillus sp. BD59S]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment