Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   BAA196FS_RS16925 Genome accession   NZ_CP042867
Coordinates   3442114..3442719 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ATCC BAA-196     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3437114..3447719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAA196FS_RS16900 (BAA196FS_3270) aes 3437151..3438110 (+) 960 WP_000801813.1 acetyl esterase -
  BAA196FS_RS16905 (BAA196FS_3271) hemH 3438107..3439069 (-) 963 WP_001250103.1 ferrochelatase -
  BAA196FS_RS16915 (BAA196FS_3272) adk 3439305..3439949 (-) 645 WP_001220233.1 adenylate kinase -
  BAA196FS_RS16920 (BAA196FS_3273) htpG 3440130..3442004 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  BAA196FS_RS16925 (BAA196FS_3274) recR 3442114..3442719 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  BAA196FS_RS16930 (BAA196FS_3275) ybaB 3442719..3443048 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  BAA196FS_RS16935 (BAA196FS_3276) dnaX 3443101..3445032 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  BAA196FS_RS16940 (BAA196FS_3277) apt 3445161..3445712 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  BAA196FS_RS16945 (BAA196FS_3278) ybaN 3445865..3446242 (-) 378 WP_001188905.1 DUF454 family protein -
  BAA196FS_RS16950 (BAA196FS_3279) priC 3446312..3446839 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  BAA196FS_RS16955 (BAA196FS_3280) rsmS 3446853..3447014 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=332419 BAA196FS_RS16925 WP_001195025.1 3442114..3442719(-) (recR) [Escherichia coli strain ATCC BAA-196]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=332419 BAA196FS_RS16925 WP_001195025.1 3442114..3442719(-) (recR) [Escherichia coli strain ATCC BAA-196]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443