Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | DYL72_RS10340 | Genome accession | NZ_CP034672 |
| Coordinates | 2147759..2148640 (-) | Length | 293 a.a. |
| NCBI ID | WP_019281902.1 | Uniprot ID | A0A289G9B4 |
| Organism | Vibrio anguillarum strain J360 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2142759..2153640
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DYL72_RS10305 (DYL72_10305) | rpsP | 2144029..2144277 (+) | 249 | WP_010319522.1 | 30S ribosomal protein S16 | - |
| DYL72_RS10310 (DYL72_10310) | rimM | 2144307..2144861 (+) | 555 | WP_013857691.1 | ribosome maturation factor RimM | - |
| DYL72_RS10315 (DYL72_10315) | trmD | 2144889..2145635 (+) | 747 | WP_010319524.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| DYL72_RS10320 (DYL72_10320) | rplS | 2145677..2146030 (+) | 354 | WP_010319525.1 | 50S ribosomal protein L19 | - |
| DYL72_RS10325 (DYL72_10325) | yacG | 2146100..2146297 (-) | 198 | WP_010319526.1 | DNA gyrase inhibitor YacG | - |
| DYL72_RS10330 (DYL72_10330) | zapD | 2146387..2147127 (-) | 741 | WP_019281903.1 | cell division protein ZapD | - |
| DYL72_RS10335 (DYL72_10335) | coaE | 2147160..2147768 (-) | 609 | WP_013857688.1 | dephospho-CoA kinase | - |
| DYL72_RS10340 (DYL72_10340) | pilD | 2147759..2148640 (-) | 882 | WP_019281902.1 | prepilin peptidase | Machinery gene |
| DYL72_RS10345 (DYL72_10345) | pilC | 2148679..2149905 (-) | 1227 | WP_069212069.1 | type II secretion system F family protein | Machinery gene |
| DYL72_RS10350 (DYL72_10350) | pilB | 2149948..2151636 (-) | 1689 | WP_029388146.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| DYL72_RS10355 (DYL72_10355) | - | 2151642..2152076 (-) | 435 | WP_050934217.1 | type IV pilin protein | - |
| DYL72_RS10360 (DYL72_10360) | nadC | 2152332..2153219 (-) | 888 | WP_019281900.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 293 a.a. Molecular weight: 32904.20 Da Isoelectric Point: 7.2157
>NTDB_id=332385 DYL72_RS10340 WP_019281902.1 2147759..2148640(-) (pilD) [Vibrio anguillarum strain J360]
MEVFIYYPWLFPLFAALFGLIVGSFLNVVIYRLPKIMEREWRQECADCFPEYHIAPPEGQLTLSLPRSSCPHCDTPIRII
DNIPLLSWLFLKGKCSRCQGPISARYPLIELLTASMSFVVASHFGFSYFSLALLFFTFVLIAATFIDFDTMLLPDKLTLP
LLWAGLSLSLMHISPVSLQDAVIGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPIIILMSSVVGI
VFGLIQLRLQKKGIDKAFPFGPYLAIAGWLTLLWGNDIMSWYLGSIMGLSSWG
MEVFIYYPWLFPLFAALFGLIVGSFLNVVIYRLPKIMEREWRQECADCFPEYHIAPPEGQLTLSLPRSSCPHCDTPIRII
DNIPLLSWLFLKGKCSRCQGPISARYPLIELLTASMSFVVASHFGFSYFSLALLFFTFVLIAATFIDFDTMLLPDKLTLP
LLWAGLSLSLMHISPVSLQDAVIGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPIIILMSSVVGI
VFGLIQLRLQKKGIDKAFPFGPYLAIAGWLTLLWGNDIMSWYLGSIMGLSSWG
Nucleotide
Download Length: 882 bp
>NTDB_id=332385 DYL72_RS10340 WP_019281902.1 2147759..2148640(-) (pilD) [Vibrio anguillarum strain J360]
ATGGAAGTTTTTATTTATTACCCTTGGCTCTTTCCACTTTTTGCAGCGTTGTTTGGCTTAATCGTGGGGAGTTTTCTCAA
TGTGGTCATTTATCGTCTACCCAAAATCATGGAGCGAGAATGGCGACAAGAGTGCGCTGACTGCTTTCCCGAATATCACA
TTGCGCCACCGGAAGGGCAACTCACGCTCAGTCTCCCCCGTTCTAGCTGCCCACACTGTGATACGCCAATCCGTATTATT
GACAATATTCCGCTACTCAGTTGGCTCTTTTTAAAAGGGAAATGTTCCCGTTGCCAAGGTCCGATCAGTGCACGCTATCC
TTTGATTGAACTGCTCACCGCCAGTATGAGCTTTGTCGTGGCTAGCCACTTCGGTTTTAGTTATTTTTCACTAGCGCTAT
TGTTTTTCACTTTTGTGCTCATCGCGGCGACGTTTATCGATTTCGATACCATGCTATTACCCGACAAGCTGACACTGCCA
CTACTGTGGGCGGGCCTCAGCTTATCATTGATGCACATTAGCCCAGTCAGTTTGCAAGATGCGGTGATCGGCGCCATTGC
TGGCTATCTGAGCTTATGGTCGGTCTATTGGCTGTTTAAACTCGTCACAGGCAAAGAAGGAATGGGTTATGGCGATTTCA
AACTGCTGGCTGCTCTCGGCGCTTGGTTGGGCTGGCAATATCTGCCCATCATCATTCTCATGTCATCTGTGGTTGGCATT
GTCTTTGGCCTAATTCAATTGCGCTTGCAAAAAAAAGGGATCGACAAAGCCTTTCCTTTTGGCCCCTATCTCGCCATTGC
TGGCTGGCTAACCTTGTTGTGGGGTAACGATATTATGAGTTGGTATTTAGGTTCAATTATGGGGTTATCGTCATGGGGTT
AG
ATGGAAGTTTTTATTTATTACCCTTGGCTCTTTCCACTTTTTGCAGCGTTGTTTGGCTTAATCGTGGGGAGTTTTCTCAA
TGTGGTCATTTATCGTCTACCCAAAATCATGGAGCGAGAATGGCGACAAGAGTGCGCTGACTGCTTTCCCGAATATCACA
TTGCGCCACCGGAAGGGCAACTCACGCTCAGTCTCCCCCGTTCTAGCTGCCCACACTGTGATACGCCAATCCGTATTATT
GACAATATTCCGCTACTCAGTTGGCTCTTTTTAAAAGGGAAATGTTCCCGTTGCCAAGGTCCGATCAGTGCACGCTATCC
TTTGATTGAACTGCTCACCGCCAGTATGAGCTTTGTCGTGGCTAGCCACTTCGGTTTTAGTTATTTTTCACTAGCGCTAT
TGTTTTTCACTTTTGTGCTCATCGCGGCGACGTTTATCGATTTCGATACCATGCTATTACCCGACAAGCTGACACTGCCA
CTACTGTGGGCGGGCCTCAGCTTATCATTGATGCACATTAGCCCAGTCAGTTTGCAAGATGCGGTGATCGGCGCCATTGC
TGGCTATCTGAGCTTATGGTCGGTCTATTGGCTGTTTAAACTCGTCACAGGCAAAGAAGGAATGGGTTATGGCGATTTCA
AACTGCTGGCTGCTCTCGGCGCTTGGTTGGGCTGGCAATATCTGCCCATCATCATTCTCATGTCATCTGTGGTTGGCATT
GTCTTTGGCCTAATTCAATTGCGCTTGCAAAAAAAAGGGATCGACAAAGCCTTTCCTTTTGGCCCCTATCTCGCCATTGC
TGGCTGGCTAACCTTGTTGTGGGGTAACGATATTATGAGTTGGTATTTAGGTTCAATTATGGGGTTATCGTCATGGGGTT
AG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
77.431 |
98.294 |
0.761 |
| pilD | Vibrio campbellii strain DS40M4 |
76.125 |
98.635 |
0.751 |
| pilD | Acinetobacter nosocomialis M2 |
56.458 |
92.491 |
0.522 |
| pilD | Acinetobacter baumannii D1279779 |
56.089 |
92.491 |
0.519 |
| pilD | Neisseria gonorrhoeae MS11 |
46.552 |
98.976 |
0.461 |