Detailed information NTG0332385

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BAA196FS_RS04880
• Genome accession: NZ_CP042867
• Coordinates: 1017576..1018568 (+)
• Length: 330 a.a.
• NCBI ID: WP_109912308.1
• Uniprot ID: -
• Organism: Escherichia coli strain ATCC BAA-196
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1012576..1023568

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAA196FS_RS04850 (BAA196FS_0956)	ispD	1012637..1013347 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BAA196FS_RS04855 (BAA196FS_0957)	ispF	1013347..1013826 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BAA196FS_RS04860 (BAA196FS_0958)	truD	1013823..1014872 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
BAA196FS_RS04865 (BAA196FS_0959)	surE	1014853..1015614 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BAA196FS_RS04870 (BAA196FS_0960)	pcm	1015608..1016234 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BAA196FS_RS04875 (BAA196FS_0961)	nlpD	1016419..1017513 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
BAA196FS_RS04880 (BAA196FS_0962)	rpoS	1017576..1018568 (+)	993	WP_109912308.1	RNA polymerase sigma factor RpoS	Regulator
BAA196FS_RS04885 (BAA196FS_0963)	ygbN	1018662..1020026 (-)	1365	WP_000104441.1	GntP family transporter	-
BAA196FS_RS04890 (BAA196FS_0964)	ygbM	1020115..1020891 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
BAA196FS_RS04895 (BAA196FS_0965)	ygbL	1020896..1021534 (-)	639	WP_001278994.1	aldolase	-
BAA196FS_RS04900 (BAA196FS_0966)	otnK	1021626..1022792 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.90 Da
• Isoelectric Point: 4.6293

>NTDB_id=332385 BAA196FS_RS04880 WP_109912308.1 1017576..1018568(+) (rpoS) [Escherichia coli strain ATCC BAA-196]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEKEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=332385 BAA196FS_RS04880 WP_109912308.1 1017576..1018568(+) (rpoS) [Escherichia coli strain ATCC BAA-196]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAAAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715