Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   DYL72_RS10145 Genome accession   NZ_CP034672
Coordinates   2112795..2113796 (+) Length   333 a.a.
NCBI ID   WP_017047531.1    Uniprot ID   -
Organism   Vibrio anguillarum strain J360     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2107795..2118796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYL72_RS10115 (DYL72_10115) ispD 2107938..2108669 (+) 732 WP_010320457.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  DYL72_RS10120 (DYL72_10120) ispF 2108662..2109147 (+) 486 WP_013857718.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  DYL72_RS10125 (DYL72_10125) truD 2109302..2110399 (+) 1098 WP_019281913.1 tRNA pseudouridine(13) synthase TruD -
  DYL72_RS10130 (DYL72_10130) surE 2110412..2111158 (+) 747 WP_010320454.1 5'/3'-nucleotidase SurE -
  DYL72_RS10135 (DYL72_10135) - 2111158..2111784 (+) 627 WP_013857716.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  DYL72_RS10140 (DYL72_10140) nlpD 2111790..2112722 (+) 933 WP_041769244.1 murein hydrolase activator NlpD -
  DYL72_RS10145 (DYL72_10145) rpoS 2112795..2113796 (+) 1002 WP_017047531.1 RNA polymerase sigma factor RpoS Regulator
  DYL72_RS10150 (DYL72_10150) mutS 2113929..2116517 (-) 2589 WP_029388151.1 DNA mismatch repair protein MutS -
  DYL72_RS10155 (DYL72_10155) cysM 2116760..2117650 (-) 891 WP_029388150.1 cysteine synthase CysM -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 38272.18 Da        Isoelectric Point: 4.4454

>NTDB_id=332381 DYL72_RS10145 WP_017047531.1 2112795..2113796(+) (rpoS) [Vibrio anguillarum strain J360]
MSISNAVTKVEEFEDQEIMDSIEVDEELTTTKSQSDDDVQIEDAKEGFDASTKSLDATQMYLSEIGFSPLLTAQEEVLYA
RRSLRGDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMN
QTRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPD
ANNSDPEISTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQ
GLNMEALFNVEYD

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=332381 DYL72_RS10145 WP_017047531.1 2112795..2113796(+) (rpoS) [Vibrio anguillarum strain J360]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAGTTTGAAGACCAAGAGATCATGGATTCGATTGAGGTTGATGAAGA
ACTCACCACCACTAAAAGCCAAAGCGATGACGATGTTCAAATCGAAGATGCCAAAGAAGGATTTGATGCGTCAACAAAAA
GCTTAGATGCAACACAGATGTATCTTAGCGAGATTGGTTTTTCTCCATTATTAACAGCTCAAGAAGAAGTACTTTATGCT
CGTCGTTCACTGAGAGGCGATGAAGCTGCTCGTAAACGCATGATCGAAAGTAACTTACGTTTGGTCGTTAAAATTTCTCG
CCGTTATGGTAATCGTGGCTTAGCTTTACTCGATCTAATTGAAGAGGGTAATTTAGGCTTGATTCGTGCGGTAGAAAAAT
TTGATCCAGAACGTGGCTTTAGATTCTCAACCTATGCTACTTGGTGGATCCGTCAAACCATTGAACGTGCATTAATGAAC
CAAACGCGCACTATCCGTTTGCCAATTCACGTCGTTAAAGAGTTGAATATCTACCTTCGCACGGCTCGCGAGCTATCGCA
GAAGTTAGATCATGAACCTACCGCAGAAGAAATTGCGTTCCAACTGGATAAGCCAGTAGAAGATGTCAGTAAAATGCTGC
GTCTGAACGAGCGTATCAGTTCTGTTGATACACCGATTGGCGGCGATGGTGATAAAGCACTACTCGATATCATCCCAGAT
GCGAACAACTCTGATCCTGAAATTTCTACGCAAGATGATGATATCCGTGAATCACTACTGAATTGGTTAGATGAACTAAA
CCCAAAACAAAAAGAGGTACTTGCACGCCGTTTTGGGCTATTAGGTTATGAACCGTCCACCTTAGAAGAGGTAGGCCGCG
AAATTAACTTAACCCGTGAACGAGTTCGTCAAATTCAAGTGGAAGGCCTACGTCGTTTGAGAGAGATCTTGGTTAAACAA
GGCTTGAACATGGAAGCGCTGTTTAATGTTGAATACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(174-247)

Sigma-70, region 4 (Sigma70_r4)

(262-315)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)

Sigma-70 region 2 (Sigma70_r2)

(94-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

86.826

100

0.871

Multiple sequence alignment