Detailed information NTG0332358

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: DYL72_RS01225
• Genome accession: NZ_CP034672
• Coordinates: 286363..287787 (+)
• Length: 474 a.a.
• NCBI ID: WP_069211963.1
• Uniprot ID: A0A289GCC7
• Organism: Vibrio anguillarum strain J360
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 281363..292787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DYL72_RS01210 (DYL72_01210)	-	281765..283723 (-)	1959	WP_069211964.1	methyl-accepting chemotaxis protein	-
DYL72_RS01215 (DYL72_01215)	-	283940..284623 (+)	684	WP_019282578.1	NAD(P)H-binding protein	-
DYL72_RS01220 (DYL72_01220)	-	284844..286211 (+)	1368	WP_029388301.1	L-cystine transporter	-
DYL72_RS01225 (DYL72_01225)	sbcB	286363..287787 (+)	1425	WP_069211963.1	exodeoxyribonuclease I	Machinery gene
DYL72_RS01230 (DYL72_01230)	-	287912..288244 (+)	333	WP_033197434.1	CidA/LrgA family protein	-
DYL72_RS01235 (DYL72_01235)	-	288244..288924 (+)	681	WP_010319624.1	CidB/LrgB family autolysis modulator	-
DYL72_RS01240 (DYL72_01240)	cdd	289133..290020 (+)	888	WP_019282580.1	cytidine deaminase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54677.13 Da
• Isoelectric Point: 5.4372

>NTDB_id=332358 DYL72_RS01225 WP_069211963.1 286363..287787(+) (sbcB) [Vibrio anguillarum strain J360]
MRQEHPPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPTDYLPSPEAALITGITPQKAVAQGLPEP
EFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENDEGFT
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLVHLNKCPILAPAKTLTAENAD
HIGVDRNLCLEHLALIKQYPEIRERLIGLYTIEREYKHSDDVDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDK
RIEPLLFRYRARHYPLTLSDEEQRRWATHCRDYFESHLEEYMLNLENLVHTHSSDEKKMAILKSVYRYVEDIAS

Nucleotide

• Length: 1425 bp

>NTDB_id=332358 DYL72_RS01225 WP_069211963.1 286363..287787(+) (sbcB) [Vibrio anguillarum strain J360]
ATGCGACAAGAGCACCCGCCTACTTTCTTTTTCCTCGACTATGAGACGTGGGGAGTCAACCCTGCGAAAGATCGTCCGAG
CCAATTTGCGGGCGTTCGCACCGATATGGATTTTAATATTATTGGCGAACCACTGGTTATCTATTGCCAACCACCAACGG
ACTATTTGCCTTCTCCAGAAGCGGCGCTTATTACGGGTATCACACCACAAAAAGCGGTGGCCCAAGGCTTGCCAGAGCCT
GAATTTATCGCCAAAATTCATCAACAACTCGCCACACCCAACACCACCAGTCTTGGTTACAACAGTATTCGTTTTGATGA
TGAAGTAACGCGTTACACTTGCTATCGTAATTTCATTGATCCGTATGCTTGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATTTACTTGATGTGATGCGCGCCTGCCATGCGCTACGTCCAGAAGGCATCAACTGGCCCGAAAATGACGAAGGCTTTACC
AGTTTTAAGTTGGAGCATCTCTCGGTTGCCAATGGCATCGAACACGCAAATGCCCACGATGCTATGGCCGATGTTATCGC
CACCATTGAGCTGGCCAAAAAAGTAAAAGCCGCCCAACCCAAGTTGTTTGATTACTTTTTTAACATGCGCCATAAACGCA
AACTCAATGATCTGATTGATATCGTCAACATGACACCTTTAATGCACGTATCGGGTATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATCGTGCCGATTGCTTGGCATCCCACCAATCAAAATGCGGTTATTGTGGTGGACCTTGCCAAAAACCCTCA
ACCCCTGATCGATTTAAGCAGCGAAGAACTGCATCAACGTCTATATACCAAACGCGAAGAGTTGGCAGAAGATGAATTGC
CAGTGCCCATCAAATTAGTGCATCTCAATAAATGCCCTATCCTTGCGCCGGCCAAAACATTAACGGCCGAAAATGCAGAC
CATATCGGGGTCGATAGAAACCTGTGCCTTGAACACTTAGCGCTCATCAAGCAGTACCCTGAGATCAGAGAAAGGCTGAT
TGGCCTCTACACAATTGAGCGAGAATATAAGCACAGTGACGATGTCGATACTCAACTCTACGACGGTTTCTTCTCTCCCG
CCGACAAAGCGGCGATGGAGATCATTCGCCAAGCTGACCCTGTCAACCTCGCCGCATTAGACATTAGTTTTAGCGATAAG
CGCATCGAACCCTTGCTGTTTCGCTACCGCGCTCGCCATTACCCATTGACATTAAGTGACGAAGAGCAAAGGCGTTGGGC
AACTCACTGTCGTGATTATTTCGAAAGCCACCTTGAAGAGTACATGCTCAATTTAGAGAACTTAGTTCACACCCACAGCA
GTGACGAAAAGAAAATGGCTATTTTAAAATCCGTTTACCGTTATGTCGAAGACATCGCGAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

3D structure

• AlphaFold DB: A0A289GCC7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	81.184	99.789	0.81