Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ELB75_RS05250 Genome accession   NZ_CP034670
Coordinates   1044071..1044532 (-) Length   153 a.a.
NCBI ID   WP_126983020.1    Uniprot ID   A0A3S9SJ67
Organism   Eikenella corrodens strain KCOM 3110     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1039071..1049532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS05240 (ELB75_05240) gcvP 1040239..1043091 (-) 2853 WP_126983018.1 aminomethyl-transferring glycine dehydrogenase -
  ELB75_RS05245 (ELB75_05245) - 1043167..1043721 (-) 555 WP_126983019.1 hypothetical protein -
  ELB75_RS05250 (ELB75_05250) recX 1044071..1044532 (-) 462 WP_126983020.1 recombination regulator RecX Regulator
  ELB75_RS05255 (ELB75_05255) - 1044519..1045217 (-) 699 WP_126983021.1 phosphoglycolate phosphatase -
  ELB75_RS05260 (ELB75_05260) - 1045539..1045880 (-) 342 WP_126983022.1 YbaB/EbfC family nucleoid-associated protein -
  ELB75_RS05265 (ELB75_05265) dnaX 1045934..1048240 (-) 2307 WP_126984211.1 DNA polymerase III subunit gamma/tau -
  ELB75_RS05270 (ELB75_05270) - 1048409..1048681 (-) 273 WP_126983023.1 DUF333 domain-containing protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17841.94 Da        Isoelectric Point: 6.9914

>NTDB_id=332327 ELB75_RS05250 WP_126983020.1 1044071..1044532(-) (recX) [Eikenella corrodens strain KCOM 3110]
MTAVKSLRSRALDLLSRREMSQAELRRKLAPYAEDPAEIDALLQEFAERNWQSDRRYAESYVYSKSSRYGRLRLAQGLQQ
QKLDNELIEAALPDRDSERATACAVLRKKFKQPPADFAAQQRAARFLAYRGFDSDTIRHALDKAWQDEEEWDE

Nucleotide


Download         Length: 462 bp        

>NTDB_id=332327 ELB75_RS05250 WP_126983020.1 1044071..1044532(-) (recX) [Eikenella corrodens strain KCOM 3110]
ATGACCGCCGTTAAATCCCTGCGCAGCCGCGCCCTAGATTTATTGTCGCGGCGGGAAATGTCGCAGGCCGAACTGCGGCG
CAAACTCGCGCCCTATGCCGAAGATCCCGCCGAAATCGACGCTTTGCTGCAAGAGTTTGCCGAGCGCAACTGGCAATCCG
ACCGGCGCTACGCCGAAAGCTACGTGTACAGCAAAAGCAGCCGCTACGGCCGCCTGCGCCTCGCCCAAGGCCTGCAACAG
CAAAAGCTGGACAACGAACTCATCGAAGCCGCCCTGCCCGACCGCGACAGCGAACGCGCCACCGCCTGCGCCGTGCTGCG
CAAAAAGTTCAAACAGCCCCCCGCCGATTTCGCCGCACAGCAACGCGCCGCCCGCTTCCTCGCCTACCGCGGCTTCGACA
GCGACACCATCCGCCACGCGCTGGATAAGGCCTGGCAGGATGAAGAAGAGTGGGACGAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9SJ67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

56.209

100

0.562

Multiple sequence alignment