Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   ELB75_RS01980 Genome accession   NZ_CP034670
Coordinates   392504..395749 (+) Length   1081 a.a.
NCBI ID   WP_126982514.1    Uniprot ID   A0A3S9SHC8
Organism   Eikenella corrodens strain KCOM 3110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 390438..401146 392504..395749 within 0


Gene organization within MGE regions


Location: 390438..401146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS01965 (ELB75_01965) tatC 390438..391187 (-) 750 WP_126982512.1 twin-arginine translocase subunit TatC -
  ELB75_RS01970 (ELB75_01970) tatB 391184..391660 (-) 477 WP_126982513.1 Sec-independent protein translocase protein TatB -
  ELB75_RS01975 (ELB75_01975) tatA 391664..391873 (-) 210 WP_035581206.1 Sec-independent protein translocase subunit TatA -
  ELB75_RS01980 (ELB75_01980) recC 392504..395749 (+) 3246 WP_126982514.1 exodeoxyribonuclease V subunit gamma Machinery gene
  ELB75_RS01995 (ELB75_01995) dusA 396198..397199 (+) 1002 WP_126982515.1 tRNA dihydrouridine(20/20a) synthase DusA -
  ELB75_RS02000 (ELB75_02000) yccS 397515..399710 (-) 2196 WP_126982516.1 YccS family putative transporter -
  ELB75_RS02005 (ELB75_02005) - 399915..400283 (-) 369 WP_126982517.1 hypothetical protein -
  ELB75_RS02010 (ELB75_02010) - 400688..401146 (-) 459 WP_126982518.1 NTF2 fold immunity protein -

Sequence

Protein


Download         Length: 1081 a.a.        Molecular weight: 120196.06 Da        Isoelectric Point: 5.9812

>NTDB_id=332323 ELB75_RS01980 WP_126982514.1 392504..395749(+) (recC) [Eikenella corrodens strain KCOM 3110]
MLHLYSSNRLEFLAETAVALMQTMPLKAVFAPEEIVVQSQGMRRYLNHYLAERSGIAANLNFSLPAALSWQLTRCFLSDA
PRLNPFAPEVLRWRLLPLLENADSALPAVLQGYLKSSTAAAYHLAGRLADVFDQYLVYRPHWLAQWEQGKLNGLGADEAW
QAALWRTLAAEAPAAHRAAQHERLLATLNPAHLPQRYLAFGISTLAPVYLDLLQALAEHTDVHLFAVNPSQQYWGDIQSP
KRLAAQAEPSAEEAGHPLLSSLGKQGRDFFDRLAVSTRTMEQVELFPTQPESPGLLQRLQADIQLLRLPEKGSAQMDGSI
VIQAAHSPLRELQILKEHLLRRLTDNPKLQPHHIAVLTPAMEDYLPFIHAVFGEAAPGSRALPYSVADVRLSRSQPLMLL
AEQLITLMQSRFETERLLPLLDAQAVCRHWQIDETDAEFLRRSVAELNVHWGADAEMRAEHGGSGKAFTWQQAAERSVLG
WLLPEGEDTLWQGVHPWPADLARQPAQAAWFVLLGKLREHHRRWQSPASIEGWIERFRALLADAAGDTPAEADQAAWQQI
SQALADWQEEAALAGYAAALPPDTACQHLSRFFGQSSEAAFLRGGITFCSMVPMRSLPFDTVCLLGLNDGKYPRQTPAPA
FDLIARHPQSGDRSRRDDDRYLFLESLLSARSHLYLSYIGRDHLKDEAQAPSPLLSELIDTLAQMAGQSSTDFAAAHVCQ
HPLQAFSTRYFVPPENGENSAGPSENGLSGSLSGLRQDYAQALNQPAAEAAPFIGDAPPEAVVEPTVSLDSFLNFWNNPV
RYWLRHALQWKGPYADRPTDSAEPYAIEHSDEVKQRYLDACCQHEDFAQTEAKLQADSLLPAGLLGEILQEPERTAAKQL
DSALLASPREPDFPFRFEHGGHTLVGSLTHLHQHGQIFYHAAKLKAPAEIRLWLQHLVYCAVHPQAKTTHLVSLDSPQTL
PPLPQAEAAEQLARWFDYYLLGQQQPLPFFPRTSLAAAKACTAEDLSAQGLPEKALAAARGKYRDSRDCPGQNQDREVAQ
VYGRDEVEPINSPLFARLVLELLAPLHLWFASEKGKGKQTN

Nucleotide


Download         Length: 3246 bp        

>NTDB_id=332323 ELB75_RS01980 WP_126982514.1 392504..395749(+) (recC) [Eikenella corrodens strain KCOM 3110]
ATGCTCCATCTTTATTCTTCCAACCGCCTAGAATTCCTTGCCGAAACCGCCGTTGCGCTGATGCAGACCATGCCGCTGAA
AGCGGTGTTTGCGCCGGAAGAAATCGTGGTGCAGAGCCAAGGGATGCGCCGTTATCTCAATCATTATTTAGCCGAGCGCA
GCGGCATTGCGGCCAATTTGAATTTCAGCCTGCCGGCAGCCTTGAGCTGGCAGCTCACGCGCTGCTTTCTGTCGGATGCG
CCGCGCCTGAACCCGTTTGCGCCGGAAGTGTTGCGCTGGCGGCTGCTGCCGCTGTTGGAAAATGCCGATTCGGCTCTGCC
GGCCGTATTGCAGGGCTACCTGAAAAGCAGCACGGCGGCGGCCTATCATTTGGCAGGGCGGCTGGCGGACGTGTTCGACC
AATATTTGGTGTATCGCCCGCATTGGCTCGCGCAATGGGAGCAGGGCAAGCTCAACGGCTTGGGCGCAGACGAAGCCTGG
CAGGCCGCGTTGTGGCGCACGCTCGCCGCCGAAGCCCCCGCCGCCCACCGCGCCGCGCAGCACGAACGGCTGCTGGCCAC
GCTGAATCCGGCGCACCTGCCGCAGCGTTATTTGGCGTTCGGCATTTCCACACTGGCGCCGGTGTATCTGGATTTGTTGC
AGGCCTTGGCCGAGCACACCGATGTGCACCTGTTTGCGGTCAACCCCAGCCAGCAATACTGGGGCGACATCCAAAGCCCG
AAACGGCTGGCCGCACAGGCCGAACCCTCAGCCGAAGAAGCCGGCCACCCGCTGCTCTCCTCGCTGGGCAAACAGGGGCG
CGATTTTTTCGACCGCCTGGCCGTGAGCACCCGCACCATGGAACAGGTGGAACTCTTCCCTACGCAGCCCGAATCGCCCG
GCCTGCTGCAACGCCTGCAGGCCGATATCCAGCTGTTGAGGCTACCTGAAAAAGGCAGCGCGCAGATGGACGGCAGCATC
GTAATCCAAGCCGCCCACAGCCCCCTGCGCGAGCTGCAAATCCTCAAAGAACACCTGTTGCGCCGTTTGACAGACAACCC
CAAACTACAACCGCACCACATCGCCGTGCTCACCCCCGCCATGGAAGACTACCTGCCATTCATCCACGCCGTGTTCGGCG
AAGCCGCGCCCGGCAGCCGCGCCCTGCCGTATTCCGTGGCCGACGTGCGTCTCAGCCGCAGCCAGCCTTTGATGCTGCTG
GCCGAGCAGCTCATCACCCTGATGCAAAGCCGCTTCGAAACCGAACGTCTGCTGCCCCTGCTCGATGCGCAAGCGGTGTG
CCGCCATTGGCAGATTGACGAAACCGATGCCGAATTCCTGCGCCGCAGCGTGGCCGAGCTCAACGTGCATTGGGGCGCGG
ATGCCGAAATGCGCGCCGAGCACGGCGGCAGCGGCAAAGCCTTCACTTGGCAGCAGGCCGCCGAACGCAGCGTGCTGGGT
TGGCTGCTGCCCGAGGGCGAAGATACGCTGTGGCAAGGCGTGCACCCCTGGCCGGCCGATTTGGCCCGCCAGCCTGCCCA
GGCCGCCTGGTTTGTGCTGCTGGGCAAACTGCGCGAGCACCACCGCCGCTGGCAAAGCCCCGCGTCCATCGAAGGCTGGA
TCGAACGCTTCCGCGCCCTTTTAGCCGATGCCGCGGGCGATACCCCTGCCGAAGCCGACCAGGCCGCCTGGCAGCAAATC
AGCCAGGCCTTGGCCGACTGGCAGGAAGAAGCCGCGCTGGCGGGCTATGCCGCAGCCCTGCCACCCGACACCGCCTGCCA
GCACCTGAGCCGTTTCTTCGGCCAAAGCAGCGAAGCTGCCTTTTTGCGCGGCGGCATTACCTTCTGCAGCATGGTGCCCA
TGCGCAGCCTGCCGTTCGACACTGTGTGTCTGCTCGGCCTGAACGACGGCAAATACCCGCGCCAAACCCCCGCCCCCGCC
TTCGACCTGATCGCCCGCCACCCCCAATCCGGCGACCGCTCCCGCCGCGACGACGACCGCTACTTGTTCCTCGAATCCCT
GCTCAGCGCCCGCAGCCACCTCTATCTGTCCTACATCGGCCGCGACCATCTCAAAGACGAAGCCCAAGCCCCCTCGCCAC
TACTGAGCGAACTCATCGACACGCTGGCACAAATGGCCGGCCAGAGCAGCACCGATTTCGCCGCCGCCCATGTGTGCCAA
CATCCCCTGCAAGCCTTTTCCACCCGCTATTTTGTCCCGCCAGAGAATGGGGAAAATTCAGCCGGTCCTAGCGAAAACGG
GCTTTCAGGTAGCCTGTCCGGCCTCCGCCAAGACTACGCCCAAGCCCTCAACCAGCCTGCCGCCGAAGCCGCCCCCTTTA
TTGGCGATGCCCCGCCCGAAGCCGTTGTCGAGCCCACGGTATCGCTCGACAGTTTCCTAAACTTCTGGAACAACCCGGTG
CGCTATTGGCTGCGCCACGCCCTGCAATGGAAAGGCCCCTATGCCGACCGTCCCACCGATTCCGCCGAGCCATACGCCAT
CGAACATTCCGACGAAGTGAAACAGCGCTACCTCGACGCCTGCTGCCAGCATGAAGATTTCGCCCAAACCGAAGCTAAAC
TGCAGGCCGACAGCCTCCTGCCCGCCGGTCTGCTCGGCGAAATCCTGCAAGAGCCCGAGCGCACCGCCGCCAAGCAGCTC
GATTCCGCGCTGCTCGCCAGCCCGCGCGAGCCCGATTTCCCCTTCCGCTTCGAGCACGGCGGCCACACCCTCGTCGGCAG
CCTCACCCACCTGCACCAGCACGGCCAAATCTTCTACCACGCCGCCAAACTCAAAGCCCCCGCCGAAATTAGGCTGTGGC
TGCAACACCTGGTGTATTGCGCCGTTCACCCCCAAGCAAAAACCACCCACCTCGTCTCCCTCGACAGCCCGCAAACCCTG
CCGCCGCTGCCGCAAGCGGAAGCCGCCGAGCAACTTGCCCGCTGGTTCGACTACTATCTGCTCGGTCAACAACAGCCGCT
GCCCTTCTTTCCCCGCACCAGCCTGGCCGCCGCCAAAGCCTGCACCGCCGAAGACCTCTCTGCCCAAGGGCTACCTGAAA
AAGCTCTCGCCGCCGCCCGCGGCAAATACCGCGACAGCCGCGACTGCCCCGGCCAAAACCAAGATCGCGAAGTCGCCCAA
GTGTACGGCCGCGATGAAGTCGAGCCGATTAACAGCCCCCTATTCGCCCGCCTCGTTTTAGAGCTGCTTGCCCCGCTGCA
TTTATGGTTTGCTTCTGAAAAAGGCAAAGGCAAACAGACAAATTAA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-303)

RecC C-terminal domain (RecC_C)

(785-1001)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9SHC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

47.498

100

0.483

Multiple sequence alignment