Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EJ065_RS05785 Genome accession   NZ_CP034669
Coordinates   1365840..1367201 (-) Length   453 a.a.
NCBI ID   WP_014394014.1    Uniprot ID   -
Organism   Corallococcus coralloides strain B035     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1360840..1372201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJ065_RS05765 (EJ065_1144) - 1360984..1361559 (+) 576 WP_128795024.1 NUDIX hydrolase -
  EJ065_RS05770 (EJ065_1145) - 1361627..1363096 (-) 1470 WP_128795025.1 HAMP domain-containing sensor histidine kinase -
  EJ065_RS05775 (EJ065_1146) - 1363321..1365039 (+) 1719 WP_128795026.1 hypothetical protein -
  EJ065_RS05780 (EJ065_1147) - 1365049..1365828 (+) 780 WP_128795027.1 hypothetical protein -
  EJ065_RS05785 (EJ065_1148) radA 1365840..1367201 (-) 1362 WP_014394014.1 DNA repair protein RadA Machinery gene
  EJ065_RS05790 (EJ065_1149) - 1367388..1367657 (+) 270 WP_120597359.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  EJ065_RS05795 (EJ065_1150) bioB 1367848..1368873 (+) 1026 WP_128795028.1 biotin synthase BioB -
  EJ065_RS05800 (EJ065_1151) bioF 1368870..1370039 (+) 1170 WP_128795029.1 8-amino-7-oxononanoate synthase -
  EJ065_RS05805 (EJ065_1152) bioD 1370029..1370724 (+) 696 WP_128795030.1 dethiobiotin synthase -
  EJ065_RS05810 (EJ065_1153) - 1370839..1371117 (+) 279 WP_014394019.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48070.38 Da        Isoelectric Point: 7.6458

>NTDB_id=332309 EJ065_RS05785 WP_014394014.1 1365840..1367201(-) (radA) [Corallococcus coralloides strain B035]
MAKAKTHYTCQACGYQTAKWLGKCPDCGAWSSLLEETEAKVDDKRPAWGASGGASKPVKLQDVTAETEVRRRTGITEFDR
VLGGGVVGGSLVLLGGDPGIGKSTLLLAALDKLSRHGPVLYVSGEESLRQTKMRAERLRVESEAIHLFAETDADRVLQAA
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAFAKRSGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRLLRAHKNRFGSTNEIGVFEMKGAGLVEVADPSALFLSERPQGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLSEPACDLAVCAALVSSLQNRPLDAKTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVLPAGSARRVEKTKLQVVGVETLSEALAAMFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=332309 EJ065_RS05785 WP_014394014.1 1365840..1367201(-) (radA) [Corallococcus coralloides strain B035]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCCTGCGGCTACCAGACGGCGAAGTGGCTCGGGAAGTGTCCGGACTG
CGGGGCCTGGAGCTCGCTCCTGGAGGAGACCGAAGCGAAGGTGGACGACAAGCGCCCGGCGTGGGGCGCGTCCGGGGGCG
CCTCCAAGCCGGTGAAGCTGCAGGACGTGACGGCGGAGACGGAAGTCCGCCGGCGCACGGGCATCACGGAGTTCGACCGC
GTCCTGGGCGGCGGCGTGGTGGGCGGCTCGCTGGTGCTCTTGGGCGGCGACCCTGGCATCGGCAAGTCCACGCTGCTGCT
GGCGGCGCTGGACAAGCTGTCGCGGCACGGGCCGGTGCTCTACGTGTCGGGGGAAGAGAGCCTGCGGCAGACGAAGATGC
GCGCGGAGCGCCTGCGGGTGGAGAGTGAAGCCATCCACCTGTTCGCGGAGACGGACGCGGACCGGGTGCTCCAGGCGGCG
GAGGCGCTGAAGCCGCAGGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAACGCGCCGGGCAG
CATCACCCAGGTGCGCGAGGTGGCGGGCCGGCTGATGGCGTTCGCCAAGCGCAGCGGGGTGCCCACGTTCCTGGTGGGCC
ACGTGACGAAGGAGGGCTCCATCGCGGGCCCCCGGGTGCTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAG
CGCGGCCACCCGTTCCGGCTGCTGCGCGCGCACAAGAACCGCTTCGGCAGCACCAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTGGTGGAGGTGGCGGACCCGTCCGCGCTGTTCCTCTCCGAGCGTCCGCAGGGCAAGTCCGGCAGCGTGG
TGACGAGCACGCTCAACGGCACGCGGCCGCTGTTGGTGGAGGTGCAGGCGCTGGTGGCGCCCACGGGCTACGGCACGGCG
CGGCGCACGGCGATTGGCGTGGACGGCAACCGCGTGGCGCTGCTGGCGGCGGTGCTGGAGAAGAAGGAGGAGATTCCGCT
GGTGGGCTGCGACCTGTTCGTCAACGTGGCGGGCGGCATGCAGTTGAGCGAGCCGGCGTGCGACCTGGCGGTGTGCGCGG
CGCTGGTGAGCAGCCTGCAGAACCGGCCGTTGGACGCGAAGACGCTGGTGCTGGGAGAGGTGGGGCTCGCGGGCGAGGTG
CGCGCGGTGGGCCAGGTGGAGCCGAGGCTCGCGGAGGCCGCGAAGATGGGCTTCCAGCGGGTGGTGCTGCCGGCCGGCAG
CGCGCGGCGCGTGGAGAAGACGAAGCTCCAGGTGGTGGGCGTGGAGACCCTGAGCGAAGCGCTGGCGGCGATGTTCGACT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)

AAA domain (AAA_25)

(71-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.876

99.779

0.528
  radA Streptococcus mitis NCTC 12261

52.318

100

0.523
  radA Streptococcus pneumoniae Rx1

52.318

100

0.523
  radA Streptococcus pneumoniae D39

52.318

100

0.523
  radA Streptococcus pneumoniae R6

52.318

100

0.523
  radA Streptococcus pneumoniae TIGR4

52.318

100

0.523
  radA Streptococcus mitis SK321

52.097

100

0.521

Multiple sequence alignment