Detailed information NTG0332304

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BAA196NC_RS04880
• Genome accession: NZ_CP042865
• Coordinates: 1017667..1018659 (+)
• Length: 330 a.a.
• NCBI ID: WP_109912308.1
• Uniprot ID: -
• Organism: Escherichia coli strain ATCC BAA-196
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1012667..1023659

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAA196NC_RS04850 (BAA196NC_0957)	ispD	1012728..1013438 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BAA196NC_RS04855 (BAA196NC_0958)	ispF	1013438..1013917 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BAA196NC_RS04860 (BAA196NC_0959)	truD	1013914..1014963 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
BAA196NC_RS04865 (BAA196NC_0960)	surE	1014944..1015705 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BAA196NC_RS04870 (BAA196NC_0961)	pcm	1015699..1016325 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BAA196NC_RS04875 (BAA196NC_0962)	nlpD	1016510..1017604 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
BAA196NC_RS04880 (BAA196NC_0963)	rpoS	1017667..1018659 (+)	993	WP_109912308.1	RNA polymerase sigma factor RpoS	Regulator
BAA196NC_RS04885 (BAA196NC_0964)	ygbN	1018753..1020117 (-)	1365	WP_000104441.1	GntP family transporter	-
BAA196NC_RS04890 (BAA196NC_0965)	ygbM	1020206..1020982 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
BAA196NC_RS04895 (BAA196NC_0966)	ygbL	1020987..1021625 (-)	639	WP_001278994.1	aldolase	-
BAA196NC_RS04900 (BAA196NC_0967)	otnK	1021717..1022883 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.90 Da
• Isoelectric Point: 4.6293

>NTDB_id=332304 BAA196NC_RS04880 WP_109912308.1 1017667..1018659(+) (rpoS) [Escherichia coli strain ATCC BAA-196]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEKEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=332304 BAA196NC_RS04880 WP_109912308.1 1017667..1018659(+) (rpoS) [Escherichia coli strain ATCC BAA-196]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAAAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715