Detailed information NTG0332261

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FVE20_RS17390
• Genome accession: NZ_CP042846
• Coordinates: 3565156..3566148 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain JME64
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3560156..3571148

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FVE20_RS17370	otnK	3560932..3562098 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
FVE20_RS17375	ygbL	3562190..3562828 (+)	639	WP_001278994.1	aldolase	-
FVE20_RS17380	ygbM	3562833..3563609 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
FVE20_RS17385	ygbN	3563698..3565062 (+)	1365	WP_000104441.1	GntP family transporter	-
FVE20_RS17390	rpoS	3565156..3566148 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
FVE20_RS17395	nlpD	3566211..3567305 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FVE20_RS17400	pcm	3567490..3568116 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FVE20_RS17405	surE	3568110..3568871 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FVE20_RS17410	truD	3568852..3569901 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FVE20_RS17415	ispF	3569898..3570377 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FVE20_RS17420	ispD	3570377..3571087 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=332261 FVE20_RS17390 WP_000081588.1 3565156..3566148(-) (rpoS) [Escherichia coli strain JME64]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=332261 FVE20_RS17390 WP_000081588.1 3565156..3566148(-) (rpoS) [Escherichia coli strain JME64]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715