Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FVE20_RS17115 Genome accession   NZ_CP042846
Coordinates   3512815..3513330 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain JME64     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3507815..3518330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE20_RS17090 ygaZ 3508214..3508951 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  FVE20_RS17095 ygaH 3508941..3509276 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FVE20_RS17100 emrR 3509367..3509897 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FVE20_RS17105 emrA 3510024..3511196 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FVE20_RS17110 emrB 3511213..3512751 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FVE20_RS17115 luxS 3512815..3513330 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FVE20_RS17120 gshA 3513480..3515036 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  FVE20_RS17125 yqaA 3515109..3515537 (-) 429 WP_001287454.1 YqaA family protein -
  FVE20_RS17130 yqaB 3515534..3516100 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FVE20_RS17160 csrA 3517558..3517743 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=332258 FVE20_RS17115 WP_001130211.1 3512815..3513330(-) (luxS) [Escherichia coli strain JME64]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=332258 FVE20_RS17115 WP_001130211.1 3512815..3513330(-) (luxS) [Escherichia coli strain JME64]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731