Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HIBPF_RS09065 Genome accession   NC_014920
Coordinates   1809505..1810107 (-) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae F3031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1804505..1815107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIBPF_RS09045 (HIBPF18840) - 1804878..1806548 (+) 1671 WP_013526468.1 fructose-specific PTS transporter subunit EIIC -
  HIBPF_RS09055 (HIBPF18870) secG 1807085..1807426 (-) 342 WP_005669259.1 preprotein translocase subunit SecG -
  HIBPF_RS09060 (HIBPF18880) - 1807534..1809489 (-) 1956 WP_013526469.1 DNA topoisomerase III -
  HIBPF_RS09065 (HIBPF18890) recR 1809505..1810107 (-) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  HIBPF_RS09070 (HIBPF18900) - 1810238..1810567 (-) 330 WP_013526470.1 YbaB/EbfC family nucleoid-associated protein -
  HIBPF_RS09075 (HIBPF18910) - 1810719..1811564 (-) 846 WP_013526471.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  HIBPF_RS09080 (HIBPF18920) - 1811637..1814237 (-) 2601 WP_013526472.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=33224 HIBPF_RS09065 WP_005626527.1 1809505..1810107(-) (recR) [Haemophilus influenzae F3031]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=33224 HIBPF_RS09065 WP_005626527.1 1809505..1810107(-) (recR) [Haemophilus influenzae F3031]
ATGCAAAGCAGCCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAGCGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCCATGTCTAAAA
TTGGTCATTGTTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCCGCAGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGTATTGGGCCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCGACGGTGGAGGGCGATGCGACGGCAAACTATATTGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCATGGCATTCCTGTCGGTGGTGAACTGGAAACTGTGGACGGCAC
AACACTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment