Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FVE20_RS05720 Genome accession   NZ_CP042846
Coordinates   1195587..1196192 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain JME64     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1190587..1201192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE20_RS05690 rsmS 1191292..1191453 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  FVE20_RS05695 priC 1191467..1191994 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  FVE20_RS05700 ybaN 1192064..1192441 (+) 378 WP_001188905.1 DUF454 family protein -
  FVE20_RS05705 apt 1192594..1193145 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FVE20_RS05710 dnaX 1193274..1195205 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  FVE20_RS05715 ybaB 1195258..1195587 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FVE20_RS05720 recR 1195587..1196192 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FVE20_RS05725 htpG 1196302..1198176 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  FVE20_RS05730 adk 1198357..1199001 (+) 645 WP_001220233.1 adenylate kinase -
  FVE20_RS05740 hemH 1199237..1200199 (+) 963 WP_001250103.1 ferrochelatase -
  FVE20_RS05745 aes 1200196..1201155 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=332227 FVE20_RS05720 WP_001195025.1 1195587..1196192(+) (recR) [Escherichia coli strain JME64]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=332227 FVE20_RS05720 WP_001195025.1 1195587..1196192(+) (recR) [Escherichia coli strain JME64]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443