Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FVE21_RS17140 Genome accession   NZ_CP042845
Coordinates   3517696..3518211 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain JME65     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3512696..3523211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE21_RS17115 ygaZ 3513095..3513832 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  FVE21_RS17120 ygaH 3513822..3514157 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FVE21_RS17125 emrR 3514248..3514778 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FVE21_RS17130 emrA 3514905..3516077 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FVE21_RS17135 emrB 3516094..3517632 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FVE21_RS17140 luxS 3517696..3518211 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FVE21_RS17145 gshA 3518361..3519917 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  FVE21_RS17150 yqaA 3519990..3520418 (-) 429 WP_001287454.1 YqaA family protein -
  FVE21_RS17155 yqaB 3520415..3520981 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FVE21_RS17185 csrA 3522439..3522624 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=332176 FVE21_RS17140 WP_001130211.1 3517696..3518211(-) (luxS) [Escherichia coli strain JME65]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=332176 FVE21_RS17140 WP_001130211.1 3517696..3518211(-) (luxS) [Escherichia coli strain JME65]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731