Detailed information NTG0332165

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: FVE21_RS13740
• Genome accession: NZ_CP042845
• Coordinates: 2786356..2787783 (+)
• Length: 475 a.a.
• NCBI ID: WP_000980589.1
• Uniprot ID: P04995
• Organism: Escherichia coli strain JME65
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2781356..2792783

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FVE21_RS13700	yeeW	2781540..2781734 (+)	195	WP_000988600.1	DUF5983 family protein	-
FVE21_RS22590	-	2781780..2781860 (+)	81	Protein_2673	hypothetical protein	-
FVE21_RS13710	-	2782149..2782277 (-)	129	Protein_2674	transposase domain-containing protein	-
FVE21_RS13715	-	2782349..2782531 (+)	183	WP_001016348.1	EutP/PduV family microcompartment system protein	-
FVE21_RS13720	tmaR	2782632..2782961 (-)	330	WP_000450409.1	DUF496 family protein	-
FVE21_RS13725	yeeA	2783133..2784191 (-)	1059	WP_001200891.1	FUSC family protein	-
FVE21_RS13730	sbmC	2784389..2784862 (-)	474	WP_001105415.1	DNA gyrase inhibitor SbmC	-
FVE21_RS13735	dacD	2784981..2786147 (-)	1167	WP_000830156.1	serine-type D-Ala-D-Ala carboxypeptidase DacD	-
FVE21_RS13740	sbcB	2786356..2787783 (+)	1428	WP_000980589.1	exodeoxyribonuclease I	Machinery gene
FVE21_RS13745	tsuB	2787826..2788053 (-)	228	WP_000234896.1	thiosulfate utilization sulfurtransferase TsuB/YeeD	-
FVE21_RS13750	tsuA	2788067..2789125 (-)	1059	WP_000492339.1	thiosulfate utilization transporter TsuA/YeeE	-
FVE21_RS13755	plaP	2789304..2790662 (-)	1359	WP_000019197.1	putrescine/proton symporter PlaP	-
FVE21_RS13760	yoeI	2790652..2790714 (-)	63	WP_010723108.1	membrane protein YoeI	-
FVE21_RS13765	yeeY	2790929..2791858 (-)	930	WP_000803351.1	LysR substrate-binding domain-containing protein	-
FVE21_RS13770	yeeZ	2791904..2792728 (-)	825	WP_000754737.1	SDR family oxidoreductase	-

Sequence

Protein

• Length: 475 a.a.
• Molecular weight: 54500.81 Da
• Isoelectric Point: 5.4700

>NTDB_id=332165 FVE21_RS13740 WP_000980589.1 2786356..2787783(+) (sbcB) [Escherichia coli strain JME65]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide

• Length: 1428 bp

>NTDB_id=332165 FVE21_RS13740 WP_000980589.1 2786356..2787783(+) (sbcB) [Escherichia coli strain JME65]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (13-188)

• Exonuclease C-terminal (ExoI_SH3) (212-472)

3D structure

• PDB: 1FXX
• PDB: 2QXF
• PDB: 3C94
• PDB: 3C95
• PDB: 3HL8
• PDB: 3HP9
• PDB: 4HCB
• PDB: 4HCC
• PDB: 4JRP
• PDB: 4JRQ
• PDB: 4JS4
• PDB: 4JS5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	59.149	98.947	0.585