Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HIBPF_RS07750 Genome accession   NC_014920
Coordinates   1537245..1537898 (-) Length   217 a.a.
NCBI ID   WP_005694574.1    Uniprot ID   -
Organism   Haemophilus influenzae F3031     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1532245..1542898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIBPF_RS07750 (HIBPF16100) sxy/tfoX 1537245..1537898 (-) 654 WP_005694574.1 DNA transformation protein TfoX Regulator
  HIBPF_RS07755 (HIBPF16110) recA 1538218..1539282 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  HIBPF_RS07760 (HIBPF16120) recX 1539362..1539820 (+) 459 WP_005692776.1 recombination regulator RecX -
  HIBPF_RS07765 (HIBPF16130) crcB 1539817..1540203 (-) 387 WP_005692779.1 fluoride efflux transporter CrcB -
  HIBPF_RS07770 (HIBPF16140) - 1540203..1541021 (-) 819 WP_005692782.1 Cof-type HAD-IIB family hydrolase -
  HIBPF_RS07775 (HIBPF16150) - 1541418..1542422 (+) 1005 WP_005651072.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25001.38 Da        Isoelectric Point: 10.0171

>NTDB_id=33214 HIBPF_RS07750 WP_005694574.1 1537245..1537898(-) (sxy/tfoX) [Haemophilus influenzae F3031]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=33214 HIBPF_RS07750 WP_005694574.1 1537245..1537898(-) (sxy/tfoX) [Haemophilus influenzae F3031]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGTTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.539

100

0.995

Multiple sequence alignment