Detailed information NTG0332097

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FVE22_RS17420
• Genome accession: NZ_CP042844
• Coordinates: 3570269..3571261 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain JME66
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3565269..3576261

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FVE22_RS17400	otnK	3566045..3567211 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
FVE22_RS17405	ygbL	3567303..3567941 (+)	639	WP_001278994.1	aldolase	-
FVE22_RS17410	ygbM	3567946..3568722 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
FVE22_RS17415	ygbN	3568811..3570175 (+)	1365	WP_000104441.1	GntP family transporter	-
FVE22_RS17420	rpoS	3570269..3571261 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
FVE22_RS17425	nlpD	3571324..3572418 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FVE22_RS17430	pcm	3572603..3573229 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FVE22_RS17435	surE	3573223..3573984 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FVE22_RS17440	truD	3573965..3575014 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FVE22_RS17445	ispF	3575011..3575490 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FVE22_RS17450	ispD	3575490..3576200 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=332097 FVE22_RS17420 WP_000081588.1 3570269..3571261(-) (rpoS) [Escherichia coli strain JME66]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=332097 FVE22_RS17420 WP_000081588.1 3570269..3571261(-) (rpoS) [Escherichia coli strain JME66]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715