Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FVE22_RS17145 Genome accession   NZ_CP042844
Coordinates   3517928..3518443 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain JME66     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3512928..3523443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE22_RS17120 ygaZ 3513327..3514064 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  FVE22_RS17125 ygaH 3514054..3514389 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FVE22_RS17130 emrR 3514480..3515010 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FVE22_RS17135 emrA 3515137..3516309 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FVE22_RS17140 emrB 3516326..3517864 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FVE22_RS17145 luxS 3517928..3518443 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FVE22_RS17150 gshA 3518593..3520149 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  FVE22_RS17155 yqaA 3520222..3520650 (-) 429 WP_001287454.1 YqaA family protein -
  FVE22_RS17160 yqaB 3520647..3521213 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FVE22_RS17190 csrA 3522671..3522856 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=332094 FVE22_RS17145 WP_001130211.1 3517928..3518443(-) (luxS) [Escherichia coli strain JME66]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=332094 FVE22_RS17145 WP_001130211.1 3517928..3518443(-) (luxS) [Escherichia coli strain JME66]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731