Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | HIBPF_RS06910 | Genome accession | NC_014920 |
| Coordinates | 1372592..1375162 (-) | Length | 856 a.a. |
| NCBI ID | WP_013526242.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae F3031 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1367592..1380162
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HIBPF_RS06895 (HIBPF14460) | - | 1368934..1369215 (-) | 282 | WP_013526240.1 | virulence factor | - |
| HIBPF_RS06900 (HIBPF14470) | rnr | 1369411..1371759 (+) | 2349 | WP_013526241.1 | ribonuclease R | - |
| HIBPF_RS06905 (HIBPF14480) | rlmB | 1371815..1372555 (+) | 741 | WP_005655733.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| HIBPF_RS06910 (HIBPF14490) | clpC | 1372592..1375162 (-) | 2571 | WP_013526242.1 | ATP-dependent chaperone ClpB | Regulator |
| HIBPF_RS06915 (HIBPF14500) | - | 1375290..1375853 (-) | 564 | WP_013526243.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| HIBPF_RS06920 (HIBPF14510) | - | 1376163..1376465 (-) | 303 | WP_013526244.1 | cell division protein ZapA | - |
| HIBPF_RS06925 (HIBPF14520) | polA | 1376614..1379421 (+) | 2808 | WP_013526245.1 | DNA polymerase I | - |
| HIBPF_RS06930 (HIBPF14530) | - | 1379447..1379794 (+) | 348 | WP_013526246.1 | serine dehydratase subunit alpha family protein | - |
Sequence
Protein
Download Length: 856 a.a. Molecular weight: 95655.12 Da Isoelectric Point: 5.0539
>NTDB_id=33209 HIBPF_RS06910 WP_013526242.1 1372592..1375162(-) (clpC) [Haemophilus influenzae F3031]
MNIEKFTTKFQEALSEAQSLAIGKDNQFIEPVHLLTALLNQQGGSIAPILTASGVNVALLRNELKTELNKLPQVIGNGGD
VQLSRQLINLLNLCDKFAQQNQDKFISSELFLLAALEERGTISDILKKCGAKKEQISQAIQQIRGGQKVNDQNAEESRQA
LEKYTIDLTARAESGKLDPVIGRDEEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKNKRVLSL
DMGALIAGAKYRGEFEERLKAVLNELSKEEGRVILFIDEIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYR
QYIEKDAALERRFQKVFVDEPSVEDTIAILRGLKERYEIHHHVDITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASS
IRMEIDSKSEPLDRLERRIIQLKLEQQALQKEEDEASRKRLEMLEKELAEKEREYAELEEVWKSEKATLSGSQHIKQELD
TAKTELEQARRAGDLAKMSELQYGRIPALEKQLEQAETSEGKEMTLLRYRVTDEEIAEVLSKATGIPVSKMMEGEKEKLL
RMEEELHKRVIGQNEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLAKFLFDSEDAMVRIDMSEFMEK
HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHADVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSDLIQGSKEESYSEMKALVMSVVSQHFRPEFINRIDETVVFHPLGKENIRAIASIQLERLAKRMETRGYELVFTDALLD
FIGEVGYDPIYGARPLKRAIQQEIENSLAQQILSGALLPGKVVTIDYANAEVQARQ
MNIEKFTTKFQEALSEAQSLAIGKDNQFIEPVHLLTALLNQQGGSIAPILTASGVNVALLRNELKTELNKLPQVIGNGGD
VQLSRQLINLLNLCDKFAQQNQDKFISSELFLLAALEERGTISDILKKCGAKKEQISQAIQQIRGGQKVNDQNAEESRQA
LEKYTIDLTARAESGKLDPVIGRDEEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKNKRVLSL
DMGALIAGAKYRGEFEERLKAVLNELSKEEGRVILFIDEIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYR
QYIEKDAALERRFQKVFVDEPSVEDTIAILRGLKERYEIHHHVDITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASS
IRMEIDSKSEPLDRLERRIIQLKLEQQALQKEEDEASRKRLEMLEKELAEKEREYAELEEVWKSEKATLSGSQHIKQELD
TAKTELEQARRAGDLAKMSELQYGRIPALEKQLEQAETSEGKEMTLLRYRVTDEEIAEVLSKATGIPVSKMMEGEKEKLL
RMEEELHKRVIGQNEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLAKFLFDSEDAMVRIDMSEFMEK
HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHADVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSDLIQGSKEESYSEMKALVMSVVSQHFRPEFINRIDETVVFHPLGKENIRAIASIQLERLAKRMETRGYELVFTDALLD
FIGEVGYDPIYGARPLKRAIQQEIENSLAQQILSGALLPGKVVTIDYANAEVQARQ
Nucleotide
Download Length: 2571 bp
>NTDB_id=33209 HIBPF_RS06910 WP_013526242.1 1372592..1375162(-) (clpC) [Haemophilus influenzae F3031]
ATGAACATTGAAAAATTTACGACAAAATTCCAAGAAGCGTTAAGCGAAGCACAATCACTTGCTATCGGAAAAGACAATCA
ATTTATTGAACCCGTGCATTTATTGACCGCACTTTTAAATCAGCAGGGCGGCTCCATTGCGCCAATTTTGACAGCAAGTG
GCGTAAATGTGGCGTTATTACGTAATGAATTAAAGACGGAACTAAATAAATTGCCACAGGTTATTGGCAATGGCGGAGAT
GTACAACTTTCACGTCAGCTGATTAATTTACTCAATCTATGTGATAAATTCGCACAACAAAACCAAGATAAATTTATTTC
GAGCGAATTGTTTTTGCTTGCAGCTTTAGAAGAACGAGGAACGATCAGCGATATTTTGAAAAAGTGCGGTGCGAAAAAAG
AACAAATTTCGCAAGCCATTCAGCAAATTAGAGGGGGACAAAAGGTGAACGATCAAAATGCAGAAGAAAGCAGACAAGCT
CTTGAAAAATATACGATTGATTTAACCGCTCGTGCAGAAAGTGGCAAACTTGATCCTGTAATTGGACGTGATGAAGAAAT
TCGTCGAGCCATTCAAGTATTACAACGTCGTACCAAAAATAACCCTGTGTTAATTGGTGAACCGGGTGTGGGGAAAACCG
CAATTGTAGAAGGCTTGGCACAACGTATCGTAAATGGCGAAGTGCCAGAAGGTTTGAAAAATAAACGCGTACTTTCATTA
GATATGGGTGCATTGATTGCTGGTGCGAAATATCGCGGAGAATTTGAAGAGCGTTTAAAAGCGGTGCTTAATGAACTTTC
TAAAGAAGAAGGTCGCGTTATCCTCTTTATTGATGAAATTCATACTATGGTCGGCGCAGGTAAAACTGATGGCGCAATGG
ATGCGGGTAACTTGTTAAAACCAAGTTTGGCACGAGGCGAATTACATTGCGTGGGTGCAACCACTTTAGATGAATATCGT
CAATATATCGAAAAAGATGCCGCACTTGAGCGTCGTTTCCAAAAAGTCTTTGTGGACGAACCTAGTGTAGAAGATACCAT
TGCGATCTTACGTGGTTTGAAAGAACGCTATGAAATTCATCATCACGTAGATATTACTGACCCAGCAATCGTAGCAGCGG
CAACGCTTTCACACCGTTATATTTCCGATCGTCAGTTACCAGATAAAGCCATTGATTTGATCGATGAAGCAGCGTCTAGC
ATTCGTATGGAAATAGATTCTAAATCTGAACCGCTTGATCGTCTTGAACGTCGAATTATCCAACTAAAATTGGAACAACA
GGCATTACAAAAAGAAGAAGACGAAGCAAGTCGCAAACGTTTAGAAATGTTAGAGAAAGAATTAGCTGAAAAAGAACGTG
AATATGCCGAACTTGAAGAAGTGTGGAAATCTGAAAAAGCAACGCTTTCTGGCTCTCAACATATTAAACAAGAGTTAGAT
ACTGCAAAAACCGAACTAGAACAAGCTCGTCGCGCGGGTGATTTAGCGAAAATGTCAGAGTTGCAATATGGTCGCATCCC
TGCTCTTGAAAAGCAACTTGAGCAAGCTGAAACCAGCGAAGGAAAAGAAATGACGCTTTTGCGCTATCGCGTCACAGATG
AAGAAATTGCAGAAGTGCTTTCTAAAGCTACAGGCATCCCTGTATCCAAAATGATGGAAGGCGAGAAAGAAAAACTCTTG
CGTATGGAAGAAGAATTGCATAAACGTGTTATCGGACAAAACGAAGCCGTGGATGCCGTGGCGAATGCTATTCGTCGTAG
CCGTGCTGGTCTTTCCGATCCTAATCGCCCAATTGGTTCTTTCTTGTTCCTAGGGCCAACAGGTGTGGGGAAAACTGAGC
TTTGCAAAACTTTGGCGAAATTCTTGTTTGATAGTGAAGATGCGATGGTACGTATTGATATGTCAGAGTTTATGGAAAAA
CACAGTGTCTCTCGCTTAGTCGGAGCGCCTCCAGGCTATGTCGGCTATGAAGAAGGTGGTTACTTAACTGAAGCGGTGCG
TCGTCGTCCGTATTCGGTGATTTTGCTCGATGAAGTGGAAAAAGCCCATGCGGATGTGTTCAACATCTTGTTGCAAGTGT
TAGATGATGGTCGTTTAACTGACGGGCAAGGTCGTACCGTGGACTTCCGTAATACGGTGGTAATCATGACCTCTAACTTG
GGTTCTGATTTAATCCAAGGCAGCAAAGAGGAAAGCTATAGCGAAATGAAGGCCTTAGTGATGTCGGTTGTTAGCCAACA
TTTCCGTCCAGAATTTATCAACCGTATTGACGAGACCGTGGTATTCCATCCACTTGGTAAAGAGAATATCCGTGCGATTG
CAAGCATTCAATTAGAACGCTTAGCAAAACGTATGGAAACTCGTGGTTACGAATTGGTGTTTACCGACGCTTTATTAGAT
TTCATTGGTGAAGTGGGTTACGACCCAATTTATGGCGCGCGTCCATTAAAACGTGCAATTCAACAAGAGATCGAAAACAG
CTTGGCACAACAAATTCTATCTGGTGCGTTATTACCTGGTAAGGTTGTTACCATTGATTATGCCAACGCAGAAGTTCAAG
CGAGACAATAG
ATGAACATTGAAAAATTTACGACAAAATTCCAAGAAGCGTTAAGCGAAGCACAATCACTTGCTATCGGAAAAGACAATCA
ATTTATTGAACCCGTGCATTTATTGACCGCACTTTTAAATCAGCAGGGCGGCTCCATTGCGCCAATTTTGACAGCAAGTG
GCGTAAATGTGGCGTTATTACGTAATGAATTAAAGACGGAACTAAATAAATTGCCACAGGTTATTGGCAATGGCGGAGAT
GTACAACTTTCACGTCAGCTGATTAATTTACTCAATCTATGTGATAAATTCGCACAACAAAACCAAGATAAATTTATTTC
GAGCGAATTGTTTTTGCTTGCAGCTTTAGAAGAACGAGGAACGATCAGCGATATTTTGAAAAAGTGCGGTGCGAAAAAAG
AACAAATTTCGCAAGCCATTCAGCAAATTAGAGGGGGACAAAAGGTGAACGATCAAAATGCAGAAGAAAGCAGACAAGCT
CTTGAAAAATATACGATTGATTTAACCGCTCGTGCAGAAAGTGGCAAACTTGATCCTGTAATTGGACGTGATGAAGAAAT
TCGTCGAGCCATTCAAGTATTACAACGTCGTACCAAAAATAACCCTGTGTTAATTGGTGAACCGGGTGTGGGGAAAACCG
CAATTGTAGAAGGCTTGGCACAACGTATCGTAAATGGCGAAGTGCCAGAAGGTTTGAAAAATAAACGCGTACTTTCATTA
GATATGGGTGCATTGATTGCTGGTGCGAAATATCGCGGAGAATTTGAAGAGCGTTTAAAAGCGGTGCTTAATGAACTTTC
TAAAGAAGAAGGTCGCGTTATCCTCTTTATTGATGAAATTCATACTATGGTCGGCGCAGGTAAAACTGATGGCGCAATGG
ATGCGGGTAACTTGTTAAAACCAAGTTTGGCACGAGGCGAATTACATTGCGTGGGTGCAACCACTTTAGATGAATATCGT
CAATATATCGAAAAAGATGCCGCACTTGAGCGTCGTTTCCAAAAAGTCTTTGTGGACGAACCTAGTGTAGAAGATACCAT
TGCGATCTTACGTGGTTTGAAAGAACGCTATGAAATTCATCATCACGTAGATATTACTGACCCAGCAATCGTAGCAGCGG
CAACGCTTTCACACCGTTATATTTCCGATCGTCAGTTACCAGATAAAGCCATTGATTTGATCGATGAAGCAGCGTCTAGC
ATTCGTATGGAAATAGATTCTAAATCTGAACCGCTTGATCGTCTTGAACGTCGAATTATCCAACTAAAATTGGAACAACA
GGCATTACAAAAAGAAGAAGACGAAGCAAGTCGCAAACGTTTAGAAATGTTAGAGAAAGAATTAGCTGAAAAAGAACGTG
AATATGCCGAACTTGAAGAAGTGTGGAAATCTGAAAAAGCAACGCTTTCTGGCTCTCAACATATTAAACAAGAGTTAGAT
ACTGCAAAAACCGAACTAGAACAAGCTCGTCGCGCGGGTGATTTAGCGAAAATGTCAGAGTTGCAATATGGTCGCATCCC
TGCTCTTGAAAAGCAACTTGAGCAAGCTGAAACCAGCGAAGGAAAAGAAATGACGCTTTTGCGCTATCGCGTCACAGATG
AAGAAATTGCAGAAGTGCTTTCTAAAGCTACAGGCATCCCTGTATCCAAAATGATGGAAGGCGAGAAAGAAAAACTCTTG
CGTATGGAAGAAGAATTGCATAAACGTGTTATCGGACAAAACGAAGCCGTGGATGCCGTGGCGAATGCTATTCGTCGTAG
CCGTGCTGGTCTTTCCGATCCTAATCGCCCAATTGGTTCTTTCTTGTTCCTAGGGCCAACAGGTGTGGGGAAAACTGAGC
TTTGCAAAACTTTGGCGAAATTCTTGTTTGATAGTGAAGATGCGATGGTACGTATTGATATGTCAGAGTTTATGGAAAAA
CACAGTGTCTCTCGCTTAGTCGGAGCGCCTCCAGGCTATGTCGGCTATGAAGAAGGTGGTTACTTAACTGAAGCGGTGCG
TCGTCGTCCGTATTCGGTGATTTTGCTCGATGAAGTGGAAAAAGCCCATGCGGATGTGTTCAACATCTTGTTGCAAGTGT
TAGATGATGGTCGTTTAACTGACGGGCAAGGTCGTACCGTGGACTTCCGTAATACGGTGGTAATCATGACCTCTAACTTG
GGTTCTGATTTAATCCAAGGCAGCAAAGAGGAAAGCTATAGCGAAATGAAGGCCTTAGTGATGTCGGTTGTTAGCCAACA
TTTCCGTCCAGAATTTATCAACCGTATTGACGAGACCGTGGTATTCCATCCACTTGGTAAAGAGAATATCCGTGCGATTG
CAAGCATTCAATTAGAACGCTTAGCAAAACGTATGGAAACTCGTGGTTACGAATTGGTGTTTACCGACGCTTTATTAGAT
TTCATTGGTGAAGTGGGTTACGACCCAATTTATGGCGCGCGTCCATTAAAACGTGCAATTCAACAAGAGATCGAAAACAG
CTTGGCACAACAAATTCTATCTGGTGCGTTATTACCTGGTAAGGTTGTTACCATTGATTATGCCAACGCAGAAGTTCAAG
CGAGACAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
45.872 |
100 |
0.467 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
43.458 |
100 |
0.446 |
| clpE | Streptococcus pneumoniae TIGR4 |
49.118 |
79.439 |
0.39 |
| clpE | Streptococcus pneumoniae R6 |
48.676 |
79.439 |
0.387 |
| clpE | Streptococcus pneumoniae Rx1 |
48.676 |
79.439 |
0.387 |
| clpE | Streptococcus pneumoniae D39 |
48.676 |
79.439 |
0.387 |
| clpE | Streptococcus mutans UA159 |
47.368 |
79.907 |
0.379 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
45.326 |
82.477 |
0.374 |