Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EJ997_RS13355 Genome accession   NZ_CP034593
Coordinates   415948..416226 (-) Length   92 a.a.
NCBI ID   WP_228201550.1    Uniprot ID   -
Organism   Flaviflexus ciconiae strain H23T48     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 410948..421226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJ997_RS01950 (EJ997_01950) - 411529..411765 (-) 237 WP_126703093.1 acyl carrier protein -
  EJ997_RS01955 (EJ997_01955) - 411842..412528 (+) 687 WP_126703094.1 hypothetical protein -
  EJ997_RS01960 (EJ997_01960) - 412535..413155 (+) 621 WP_126703095.1 L-threonylcarbamoyladenylate synthase -
  EJ997_RS01965 (EJ997_01965) - 413152..413784 (+) 633 WP_126703096.1 HAD hydrolase-like protein -
  EJ997_RS01970 (EJ997_01970) - 414036..415667 (-) 1632 WP_228201547.1 ABC transporter ATP-binding protein -
  EJ997_RS13350 - 415577..415951 (-) 375 WP_228201549.1 hypothetical protein -
  EJ997_RS13355 rcrP 415948..416226 (-) 279 WP_228201550.1 hypothetical protein Regulator
  EJ997_RS01975 (EJ997_01975) - 416151..417698 (-) 1548 WP_228201551.1 ABC transporter ATP-binding protein -
  EJ997_RS01980 (EJ997_01980) aceE 417762..420515 (-) 2754 WP_126703097.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type -
  EJ997_RS01985 (EJ997_01985) - 420821..421204 (+) 384 WP_228201659.1 DUF3052 family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 9890.12 Da        Isoelectric Point: 4.0604

>NTDB_id=332079 EJ997_RS13355 WP_228201550.1 415948..416226(-) (rcrP) [Flaviflexus ciconiae strain H23T48]
MAEDVDLIIFDDSFSALDFATDKKLRAALPDAIPNVAVLIVAQRISTIRGADQILVLDGGRDVGQGTHEELKETCSTYRE
IVASQLSAEEAA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=332079 EJ997_RS13355 WP_228201550.1 415948..416226(-) (rcrP) [Flaviflexus ciconiae strain H23T48]
ATGGCCGAAGATGTTGACCTCATTATTTTTGATGACTCGTTCTCGGCCCTGGACTTTGCAACCGACAAGAAGCTGAGAGC
AGCTCTTCCCGACGCAATTCCTAACGTTGCCGTCCTGATTGTCGCTCAGCGAATCTCGACAATCCGCGGCGCCGACCAGA
TCCTCGTCCTCGACGGGGGCCGCGACGTTGGCCAGGGCACTCACGAGGAGCTCAAGGAAACCTGCTCGACCTATCGGGAG
ATCGTCGCATCCCAGCTATCGGCGGAGGAGGCAGCATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.667

97.826

0.554

Multiple sequence alignment