Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   FVE23_RS17445 Genome accession   NZ_CP042843
Coordinates   3575150..3576142 (-) Length   330 a.a.
NCBI ID   WP_000081588.1    Uniprot ID   Q540P0
Organism   Escherichia coli strain JME67     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3570150..3581142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE23_RS17425 otnK 3570926..3572092 (+) 1167 WP_001393459.1 3-oxo-tetronate kinase -
  FVE23_RS17430 ygbL 3572184..3572822 (+) 639 WP_001278994.1 aldolase -
  FVE23_RS17435 ygbM 3572827..3573603 (+) 777 WP_001136934.1 HPr family phosphocarrier protein -
  FVE23_RS17440 ygbN 3573692..3575056 (+) 1365 WP_000104441.1 GntP family transporter -
  FVE23_RS17445 rpoS 3575150..3576142 (-) 993 WP_000081588.1 RNA polymerase sigma factor RpoS Regulator
  FVE23_RS17450 nlpD 3576205..3577299 (-) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  FVE23_RS17455 pcm 3577484..3578110 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  FVE23_RS17460 surE 3578104..3578865 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  FVE23_RS17465 truD 3578846..3579895 (-) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  FVE23_RS17470 ispF 3579892..3580371 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  FVE23_RS17475 ispD 3580371..3581081 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37971.86 Da        Isoelectric Point: 4.5886

>NTDB_id=332015 FVE23_RS17445 WP_000081588.1 3575150..3576142(-) (rpoS) [Escherichia coli strain JME67]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=332015 FVE23_RS17445 WP_000081588.1 3575150..3576142(-) (rpoS) [Escherichia coli strain JME67]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)

Sigma-70 region 3 (Sigma70_r3)

(174-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q540P0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715