Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FVE23_RS17170 Genome accession   NZ_CP042843
Coordinates   3522809..3523324 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain JME67     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3517809..3528324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE23_RS17145 ygaZ 3518208..3518945 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  FVE23_RS17150 ygaH 3518935..3519270 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FVE23_RS17155 emrR 3519361..3519891 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FVE23_RS17160 emrA 3520018..3521190 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FVE23_RS17165 emrB 3521207..3522745 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FVE23_RS17170 luxS 3522809..3523324 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FVE23_RS17175 gshA 3523474..3525030 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  FVE23_RS17180 yqaA 3525103..3525531 (-) 429 WP_001287454.1 YqaA family protein -
  FVE23_RS17185 yqaB 3525528..3526094 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FVE23_RS17215 csrA 3527552..3527737 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=332012 FVE23_RS17170 WP_001130211.1 3522809..3523324(-) (luxS) [Escherichia coli strain JME67]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=332012 FVE23_RS17170 WP_001130211.1 3522809..3523324(-) (luxS) [Escherichia coli strain JME67]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment