Detailed information NTG0332001

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: FVE23_RS13770
• Genome accession: NZ_CP042843
• Coordinates: 2791469..2792896 (+)
• Length: 475 a.a.
• NCBI ID: WP_000980589.1
• Uniprot ID: P04995
• Organism: Escherichia coli strain JME67
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2786469..2797896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FVE23_RS13730	yeeW	2786653..2786847 (+)	195	WP_000988600.1	DUF5983 family protein	-
FVE23_RS22620	-	2786893..2786973 (+)	81	Protein_2679	hypothetical protein	-
FVE23_RS13740	-	2787262..2787390 (-)	129	Protein_2680	transposase domain-containing protein	-
FVE23_RS13745	-	2787462..2787644 (+)	183	WP_001016348.1	EutP/PduV family microcompartment system protein	-
FVE23_RS13750	tmaR	2787745..2788074 (-)	330	WP_000450409.1	DUF496 family protein	-
FVE23_RS13755	yeeA	2788246..2789304 (-)	1059	WP_001200891.1	FUSC family protein	-
FVE23_RS13760	sbmC	2789502..2789975 (-)	474	WP_001105415.1	DNA gyrase inhibitor SbmC	-
FVE23_RS13765	dacD	2790094..2791260 (-)	1167	WP_000830156.1	serine-type D-Ala-D-Ala carboxypeptidase DacD	-
FVE23_RS13770	sbcB	2791469..2792896 (+)	1428	WP_000980589.1	exodeoxyribonuclease I	Machinery gene
FVE23_RS13775	tsuB	2792939..2793166 (-)	228	WP_000234896.1	thiosulfate utilization sulfurtransferase TsuB/YeeD	-
FVE23_RS13780	tsuA	2793180..2794238 (-)	1059	WP_000492339.1	thiosulfate utilization transporter TsuA/YeeE	-
FVE23_RS13785	plaP	2794417..2795775 (-)	1359	WP_000019197.1	putrescine/proton symporter PlaP	-
FVE23_RS13790	yoeI	2795765..2795827 (-)	63	WP_010723108.1	membrane protein YoeI	-
FVE23_RS13795	yeeY	2796042..2796971 (-)	930	WP_000803351.1	LysR substrate-binding domain-containing protein	-
FVE23_RS13800	yeeZ	2797017..2797841 (-)	825	WP_000754737.1	SDR family oxidoreductase	-

Sequence

Protein

• Length: 475 a.a.
• Molecular weight: 54500.81 Da
• Isoelectric Point: 5.4700

>NTDB_id=332001 FVE23_RS13770 WP_000980589.1 2791469..2792896(+) (sbcB) [Escherichia coli strain JME67]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide

• Length: 1428 bp

>NTDB_id=332001 FVE23_RS13770 WP_000980589.1 2791469..2792896(+) (sbcB) [Escherichia coli strain JME67]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (13-188)

• Exonuclease C-terminal (ExoI_SH3) (212-472)

3D structure

• PDB: 1FXX
• PDB: 2QXF
• PDB: 3C94
• PDB: 3C95
• PDB: 3HL8
• PDB: 3HP9
• PDB: 4HCB
• PDB: 4HCC
• PDB: 4JRP
• PDB: 4JRQ
• PDB: 4JS4
• PDB: 4JS5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	59.149	98.947	0.585