Detailed information NTG0331946

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: EKH72_RS15025
• Genome accession: NZ_CP034565
• Coordinates: 2923414..2924421 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain D3112
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2918414..2929421

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EKH72_RS15000	rplC	2918948..2919577 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
EKH72_RS15005	rpsJ	2919592..2919903 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
EKH72_RS15010	rpmE	2920361..2920582 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
EKH72_RS15020	priA	2920877..2923081 (+)	2205	WP_078231457.1	primosomal protein N'	-
EKH72_RS15025	cytR	2923414..2924421 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
EKH72_RS15030	ftsN	2924598..2925143 (+)	546	WP_005481405.1	cell division protein FtsN	-
EKH72_RS15035	hslV	2925308..2925859 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
EKH72_RS15040	hslU	2925883..2927214 (+)	1332	WP_005457198.1	HslU--HslV peptidase ATPase subunit	-
EKH72_RS15045	-	2927399..2928316 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
EKH72_RS15050	rraA	2928393..2928905 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
EKH72_RS15055	zapB	2929010..2929252 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=331946 EKH72_RS15025 WP_005481416.1 2923414..2924421(+) (cytR) [Vibrio parahaemolyticus strain D3112]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=331946 EKH72_RS15025 WP_005481416.1 2923414..2924421(+) (cytR) [Vibrio parahaemolyticus strain D3112]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCAGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTACGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCAAGAAGCCAAACGACTCGGTCTGCGCGTTCCGCAAGATTT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGTGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904