Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EKH72_RS03070 Genome accession   NZ_CP034565
Coordinates   578146..578664 (+) Length   172 a.a.
NCBI ID   WP_129829842.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain D3112     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 573146..583664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKH72_RS03060 gshA 575881..577449 (+) 1569 WP_015297257.1 glutamate--cysteine ligase -
  EKH72_RS03065 - 577474..578079 (+) 606 WP_015297256.1 hypothetical protein -
  EKH72_RS03070 luxS 578146..578664 (+) 519 WP_129829842.1 S-ribosylhomocysteine lyase Regulator
  EKH72_RS03075 - 578726..580006 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  EKH72_RS03080 - 580132..580926 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  EKH72_RS03085 ffh 581139..582530 (+) 1392 WP_129829843.1 signal recognition particle protein -
  EKH72_RS03090 rpsP 582740..582988 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  EKH72_RS03095 rimM 583017..583565 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19061.79 Da        Isoelectric Point: 4.7134

>NTDB_id=331927 EKH72_RS03070 WP_129829842.1 578146..578664(+) (luxS) [Vibrio parahaemolyticus strain D3112]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELV
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=331927 EKH72_RS03070 WP_129829842.1 578146..578664(+) (luxS) [Vibrio parahaemolyticus strain D3112]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGTT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878

Multiple sequence alignment