Detailed information NTG0331924

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EKH72_RS02940
• Genome accession: NZ_CP034565
• Coordinates: 555561..556550 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain D3112
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 550561..561550

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EKH72_RS02905	ftsB	550569..550850 (+)	282	WP_005455577.1	cell division protein FtsB	-
EKH72_RS02910	ispD	550852..551556 (+)	705	WP_129829838.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EKH72_RS02915	ispF	551574..552050 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EKH72_RS02920	truD	552097..553140 (+)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
EKH72_RS02925	surE	553140..553916 (+)	777	WP_042762073.1	5'/3'-nucleotidase SurE	-
EKH72_RS02930	-	553916..554542 (+)	627	WP_023585674.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EKH72_RS02935	-	554557..555480 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
EKH72_RS02940	rpoS	555561..556550 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
EKH72_RS02945	mutS	556629..559190 (-)	2562	WP_017449150.1	DNA mismatch repair protein MutS	-
EKH72_RS02950	pncC	559275..559757 (+)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
EKH72_RS02955	recA	559958..561001 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=331924 EKH72_RS02940 WP_005478537.1 555561..556550(+) (rpoS) [Vibrio parahaemolyticus strain D3112]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=331924 EKH72_RS02940 WP_005478537.1 555561..556550(+) (rpoS) [Vibrio parahaemolyticus strain D3112]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTTCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851