Detailed information NTG0331822

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FTO72_RS05020
• Genome accession: NZ_CP042588
• Coordinates: 1033822..1034814 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain PK6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1028822..1039814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FTO72_RS04990 (FTO72_04990)	ispD	1028883..1029593 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FTO72_RS04995 (FTO72_04995)	ispF	1029593..1030072 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FTO72_RS05000 (FTO72_05000)	truD	1030069..1031118 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
FTO72_RS05005 (FTO72_05005)	surE	1031099..1031860 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FTO72_RS05010 (FTO72_05010)	pcm	1031854..1032480 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FTO72_RS05015 (FTO72_05015)	nlpD	1032665..1033759 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FTO72_RS05020 (FTO72_05020)	rpoS	1033822..1034814 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FTO72_RS05025 (FTO72_05025)	ygbN	1034908..1036272 (-)	1365	WP_000104459.1	GntP family transporter	-
FTO72_RS05030 (FTO72_05030)	ygbM	1036361..1037137 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
FTO72_RS05035 (FTO72_05035)	ygbL	1037142..1037780 (-)	639	WP_001278994.1	aldolase	-
FTO72_RS05040 (FTO72_05040)	otnK	1037777..1039039 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=331822 FTO72_RS05020 WP_000081550.1 1033822..1034814(+) (rpoS) [Escherichia coli strain PK6]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=331822 FTO72_RS05020 WP_000081550.1 1033822..1034814(+) (rpoS) [Escherichia coli strain PK6]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715