Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FQR64_RS17230 Genome accession   NZ_CP042585
Coordinates   3443533..3444138 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain LD91-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3438533..3449138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQR64_RS17210 (FQR64_17215) aes 3438674..3439633 (+) 960 WP_146881468.1 acetyl esterase -
  FQR64_RS17215 (FQR64_17220) hemH 3439630..3440592 (-) 963 WP_001250120.1 ferrochelatase -
  FQR64_RS17220 (FQR64_17225) adk 3440724..3441368 (-) 645 WP_001345715.1 adenylate kinase -
  FQR64_RS17225 (FQR64_17230) htpG 3441549..3443423 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  FQR64_RS17230 (FQR64_17235) recR 3443533..3444138 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FQR64_RS17235 (FQR64_17240) ybaB 3444138..3444467 (-) 330 WP_001442196.1 YbaB/EbfC family nucleoid-associated protein -
  FQR64_RS17240 (FQR64_17245) dnaX 3444520..3446451 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  FQR64_RS17245 (FQR64_17250) apt 3446580..3447131 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FQR64_RS17250 (FQR64_17255) ybaN 3447284..3447661 (-) 378 WP_001188905.1 DUF454 family protein -
  FQR64_RS17255 (FQR64_17260) priC 3447731..3448258 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  FQR64_RS17260 (FQR64_17265) rsmS 3448272..3448433 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  FQR64_RS26280 - 3448486..3448584 (-) 99 Protein_3288 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=331775 FQR64_RS17230 WP_001195025.1 3443533..3444138(-) (recR) [Escherichia coli strain LD91-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=331775 FQR64_RS17230 WP_001195025.1 3443533..3444138(-) (recR) [Escherichia coli strain LD91-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443