Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EHW89_RS02700 Genome accession   NZ_CP034543
Coordinates   544622..546424 (+) Length   600 a.a.
NCBI ID   WP_126466609.1    Uniprot ID   A0A3Q9EY60
Organism   Streptococcus periodonticum strain KCOM 2412     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 539622..551424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHW89_RS02680 (EHW89_02680) - 539912..540619 (+) 708 WP_126466605.1 glucosamine-6-phosphate deaminase -
  EHW89_RS02685 (EHW89_02685) - 540735..542093 (+) 1359 WP_126466606.1 DUF1958 domain-containing protein -
  EHW89_RS02690 (EHW89_02690) - 542172..543341 (+) 1170 WP_126466607.1 MFS transporter -
  EHW89_RS02695 (EHW89_02695) coiA 543639..544670 (+) 1032 WP_126466608.1 competence protein CoiA Machinery gene
  EHW89_RS02700 (EHW89_02700) pepF 544622..546424 (+) 1803 WP_126466609.1 oligoendopeptidase F Regulator
  EHW89_RS02705 (EHW89_02705) - 546426..547109 (+) 684 WP_126466610.1 O-methyltransferase -
  EHW89_RS02710 (EHW89_02710) prsA 547216..548154 (+) 939 WP_106384640.1 peptidylprolyl isomerase PrsA -
  EHW89_RS02715 (EHW89_02715) - 548292..548861 (+) 570 WP_080553209.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69198.25 Da        Isoelectric Point: 4.5441

>NTDB_id=331774 EHW89_RS02700 WP_126466609.1 544622..546424(+) (pepF) [Streptococcus periodonticum strain KCOM 2412]
MAKQRNEIEEKYTWDLTTIFPTDEAFEAALTQVSKELKEASSLAGHLLDSADSLLKTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMAIYSEFGQALAFYEPEFMEITDEQYQTFLAEKPELQIYQHFFDKLLQKKPHILSQREEELLAGA
GEIFSAAGDTFGILDNADIVFPTVHDEEGNEVQLTHGNYISLVESKNRTVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRNFSSAREAALSANFIPESVYDSLVSAVNKHLPLLHRYIALRAKILGLSDLKMYDLYTPLSEADYKFTYEEALM
KAEEVLAILGEDYLGRVKEAFSDRWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTREN
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVDDDQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGKVLTSEF
LNDLYADLNEKYYGLTKEDNPQIQYEWARIPHFYYDYYVFQYSTGFSAASALADKIVNGTQEDKEKYLNYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=331774 EHW89_RS02700 WP_126466609.1 544622..546424(+) (pepF) [Streptococcus periodonticum strain KCOM 2412]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATACACTTGGGACCTAACAACGATTTTCCCAACAGATGAAGCTTTTGA
GGCAGCGTTAACTCAAGTTTCAAAAGAATTAAAAGAAGCCAGCAGCTTAGCCGGTCATCTTTTGGACTCAGCTGACAGCC
TCTTAAAAACAACAGAAATCCAATTGGACTTGATGCGTCGTATCGAAAAACTCTATTCCTATGCTCACATGAAAAATGAC
CAAGATACACGCGTGGCAAAATACCAAGAATACCAAGCCAAAGGAATGGCCATTTATAGTGAGTTCGGACAGGCCCTTGC
TTTTTATGAGCCAGAATTTATGGAAATCACAGACGAGCAATATCAGACGTTCTTAGCTGAAAAGCCTGAATTGCAAATCT
ATCAGCACTTCTTTGATAAGTTGCTGCAAAAGAAACCTCACATCCTTTCTCAACGTGAAGAAGAATTGTTGGCAGGAGCT
GGTGAAATTTTTAGTGCTGCAGGCGATACTTTTGGAATCTTGGACAATGCTGATATTGTCTTTCCAACCGTGCACGACGA
AGAAGGAAATGAAGTGCAATTGACGCACGGAAATTACATTAGTTTAGTGGAGTCGAAAAATCGTACAGTCCGCAAGGAAG
CTTATGAAGCGCTTTATAGCGTCTATGAGCAATACCAACATACTTATGCTAAGACACTCCAAACGAATGTTAAAGTTCAT
AATTACAATGCCAAAGTTCGTAATTTTTCTTCTGCGCGTGAAGCTGCTTTGTCTGCTAACTTTATTCCAGAAAGTGTTTA
TGATAGCTTAGTGTCTGCGGTAAACAAACATTTGCCACTCTTACATCGCTACATTGCCCTACGTGCAAAGATTTTAGGCC
TTTCTGATTTGAAAATGTACGACCTCTATACACCATTGTCAGAAGCAGATTACAAATTTACTTATGAGGAAGCCTTGATG
AAAGCAGAAGAAGTCTTAGCTATCCTTGGAGAAGATTATCTAGGTCGAGTAAAAGAAGCCTTTTCAGATCGTTGGATTGA
TGTTTATGAAAACCAAGGCAAGCGCTCTGGGGCTTATTCTGGTGGTTCTTACGATACCAATGCTTTTATGTTGCTCAACT
GGCAAGATACGTTGGACAATCTTTTCACGCTGGTTCATGAAACAGGTCACAGTATGCATTCTAGCTATACTCGTGAAAAT
CAGCCGTACGTTTACGGAGATTATTCTATTTTCTTAGCTGAGATTGCTTCTACGACCAACGAAAATATCTTGACGGAGAA
ATTATTGGAAGAAGTAGATGACGATCAAACCCGCTTTGCGATTCTGAATCATTTCTTAGATGGCTTCCGTGGGACTGTTT
TCCGTCAAACTCAATTTGCCGAGTTTGAACATGCCATTCACAAAGCTGACCAAGAAGGTAAAGTCTTAACGAGTGAATTT
TTGAATGATTTGTACGCAGATTTGAATGAAAAATATTATGGCTTGACGAAAGAGGACAACCCACAAATTCAATATGAATG
GGCACGGATTCCACATTTCTACTATGATTACTATGTTTTCCAATACTCAACCGGTTTCTCAGCTGCTTCTGCCTTAGCAG
ATAAGATTGTTAACGGAACGCAAGAAGATAAAGAGAAGTATCTCAACTACTTGAAAGCAGGAAATTCTGATTATCCGCTA
AATGTCATTAAAAAAGCTGGTGTAGATATGGAAAAAGAAGACTATCTCAATGCTGCCTTTGCAGTCTTTGAACGTCGTCT
GGATGAATTTGAAGCACTCGTAGAAAAGTTAGGACTGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9EY60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.456

99.333

0.68

Multiple sequence alignment