Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   EHW89_RS02230 Genome accession   NZ_CP034543
Coordinates   446293..447003 (-) Length   236 a.a.
NCBI ID   WP_126466553.1    Uniprot ID   -
Organism   Streptococcus periodonticum strain KCOM 2412     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 441293..452003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHW89_RS02215 (EHW89_02215) - 441688..442812 (+) 1125 WP_106384591.1 AI-2E family transporter -
  EHW89_RS02220 (EHW89_02220) - 443034..444683 (+) 1650 WP_126466552.1 phosphoenolpyruvate carboxykinase (ATP) -
  EHW89_RS02225 (EHW89_02225) - 444800..446140 (+) 1341 WP_049507515.1 hemolysin family protein -
  EHW89_RS02230 (EHW89_02230) treR 446293..447003 (-) 711 WP_126466553.1 trehalose operon repressor Regulator
  EHW89_RS02235 (EHW89_02235) treP 447182..449194 (+) 2013 WP_126466554.1 PTS system trehalose-specific EIIBC component -
  EHW89_RS02240 (EHW89_02240) treC 449401..451032 (+) 1632 WP_126466555.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27644.70 Da        Isoelectric Point: 9.2637

>NTDB_id=331770 EHW89_RS02230 WP_126466553.1 446293..447003(-) (treR) [Streptococcus periodonticum strain KCOM 2412]
MKKYEQIFKLLEQDILNEKYQMNDYLPSEHELVQAYKVSRDTIRKSLDLLQKAGLIQKMRGQGSKVIQQEQIDFPVSNLT
SYQELVRQHGMNSKTNVIQLEKITVDKKLSSLTGFPEYRLMWRIIRQRVVDGIASVLDIDYLDKSFVPSISREIAEHSIY
AYLEDELGLHISYAQKEITIDPATNRDKILMNIGNDHHVVSVKSKVYLADGQQFQFTDSRHKLEKFRFVDFSKRQK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=331770 EHW89_RS02230 WP_126466553.1 446293..447003(-) (treR) [Streptococcus periodonticum strain KCOM 2412]
ATGAAAAAATATGAACAAATTTTTAAACTCTTAGAACAAGATATTCTAAACGAGAAATATCAGATGAATGATTATCTTCC
TAGCGAACACGAACTTGTCCAGGCCTACAAGGTCAGCCGTGACACGATTCGTAAATCGCTTGATTTGCTTCAAAAAGCTG
GTCTCATTCAAAAAATGAGAGGTCAAGGCTCTAAAGTCATCCAACAAGAACAGATTGACTTTCCCGTTTCCAACCTAACT
AGTTACCAAGAACTTGTCCGGCAACATGGAATGAATTCTAAAACCAATGTCATACAGTTAGAAAAAATTACAGTTGATAA
AAAATTATCCAGTCTTACTGGTTTTCCTGAATACCGTCTGATGTGGCGGATTATTCGCCAAAGGGTCGTTGACGGGATTG
CCTCCGTCTTGGATATTGATTACCTTGATAAGAGTTTTGTCCCTTCTATTAGCCGTGAAATTGCAGAGCATTCAATTTAT
GCTTATTTAGAAGATGAACTGGGACTGCACATTTCTTACGCCCAAAAAGAAATCACAATTGATCCAGCCACCAATCGCGA
TAAAATATTGATGAACATTGGAAATGACCACCATGTCGTCTCTGTCAAATCCAAAGTTTATCTTGCAGACGGACAGCAAT
TTCAGTTTACAGATAGTCGTCATAAACTCGAAAAATTCCGTTTCGTTGACTTTTCCAAACGGCAAAAATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

63.983

100

0.64

Multiple sequence alignment