Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EHW89_RS00955 Genome accession   NZ_CP034543
Coordinates   177034..178431 (+) Length   465 a.a.
NCBI ID   WP_126468029.1    Uniprot ID   -
Organism   Streptococcus periodonticum strain KCOM 2412     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 172034..183431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHW89_RS00930 (EHW89_00930) dinB 172628..173695 (+) 1068 WP_126468027.1 DNA polymerase IV -
  EHW89_RS00935 (EHW89_00935) - 173960..175161 (-) 1202 Protein_148 IS110 family transposase -
  EHW89_RS00945 (EHW89_00945) - 175493..176516 (+) 1024 Protein_149 S66 peptidase family protein -
  EHW89_RS00950 (EHW89_00950) - 176610..177053 (+) 444 WP_049507000.1 dUTP diphosphatase -
  EHW89_RS00955 (EHW89_00955) radA 177034..178431 (+) 1398 WP_126468029.1 DNA repair protein RadA Machinery gene
  EHW89_RS00960 (EHW89_00960) gltX 178639..180096 (+) 1458 WP_126466427.1 glutamate--tRNA ligase -
  EHW89_RS00965 (EHW89_00965) dapD 180359..181057 (+) 699 WP_126466428.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  EHW89_RS00970 (EHW89_00970) - 181070..182200 (+) 1131 WP_126466429.1 N-acetyldiaminopimelate deacetylase -
  EHW89_RS00975 (EHW89_00975) - 182245..182772 (+) 528 WP_126466430.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 50909.49 Da        Isoelectric Point: 5.5865

>NTDB_id=331748 EHW89_RS00955 WP_126468029.1 177034..178431(+) (radA) [Streptococcus periodonticum strain KCOM 2412]
MEVLGIKKEESIIAKKKTTFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEVTEVKNARVSLTGEKSRPMKLAEVTSINVN
RTKTDMDEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHKGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYA
ETNMHQIRAEIEKIKPDFLIIDSIQTIISPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEH
MVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQ
ALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQEC
FIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLNIPETIEVIDVTTIGEVLKKVFG

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=331748 EHW89_RS00955 WP_126468029.1 177034..178431(+) (radA) [Streptococcus periodonticum strain KCOM 2412]
TTGGAAGTACTGGGCATTAAGAAAGAGGAATCTATCATAGCCAAGAAAAAAACGACATTTGTTTGTCAAAATTGTGAATA
CCATTCGCCCAAGTATCTGGGGCGTTGTCCGAATTGTGGTGCTTGGTCGTCCTTTGTTGAAGAAGTCGAAGTTACAGAGG
TTAAGAATGCGCGTGTTTCGCTGACGGGTGAAAAAAGTCGCCCGATGAAGTTAGCGGAGGTGACTTCTATCAATGTCAAC
CGTACCAAGACAGATATGGATGAGTTTAACCGCGTCTTGGGTGGCGGCGTGGTGCCAGGAAGTTTAGTTCTAATCGGAGG
AGATCCCGGTATTGGGAAATCTACCCTTTTATTGCAGGTTTCGACCCAACTCTCTCACAAGGGAACGGTATTGTATGTCA
GTGGGGAAGAGTCTGCTGAGCAGATTAAGTTGCGTGCGGAGCGATTAGGCGATATTGACAGTGAGTTTTATCTTTATGCC
GAGACCAATATGCATCAGATTCGTGCTGAGATTGAAAAAATTAAGCCAGATTTCTTGATTATAGACTCTATTCAGACGAT
TATTTCGCCAGAAATTTCCAGCGTGCAAGGGTCGGTTTCACAAGTCCGAGAAGTGACAGCGGAGCTGATGCAGTTGGCAA
AAACCAACAATATTGCCACCTTTATCGTGGGCCATATGACCAAGGAAGGAACGCTGGCTGGACCTAGAACCTTGGAACAC
ATGGTGGATACGGTACTTTATTTTGAAGGTGAGCGACAGCATACTTTTCGTATTTTGCGGGCGGTCAAAAATCGCTTCGG
CTCTACGAATGAAATCGGCATTTTTGAGATGCAGTCAGGTGGGCTGGTTGAAGTGCTCAATCCTAGTCAGGTTTTCTTAG
AGGAGCGTTTAGATGGGGCAACAGGCTCTTCTATCGTGGTGACTATGGAGGGGACGCGTCCAATCCTTGCGGAAGTACAG
GCTTTGGTGACACCGACCATGTTTGGCAATGCCAAGCGGACAACGACAGGATTGGATTTCAATCGTGCTAGTCTGATTAT
GGCTGTTTTGGAAAAGCGAGCAGGGTTATTATTGCAAAATCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTCAAATTAG
ATGAGCCAGCTATTGACTTAGCTGTTGCCGTTGCAATTGCTTCGAGTTATAAAGATTTGCCAACGAATCCACAAGAATGT
TTTATTGGTGAAATCGGTCTGACGGGCGAAATCCGCCGTGTCAATCGCATTGAGCAGCGTATCAATGAAGCTGCTAAGCT
GGGCTTCACCAAAGTTTACGCTCCTAAAAACTCTCTGAACGGATTGAACATTCCCGAAACTATTGAAGTTATTGATGTAA
CAACGATTGGTGAAGTGTTGAAGAAGGTGTTTGGGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(373-437)

AAA domain (AAA_25)

(77-230)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(20-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

91.372

97.204

0.888
  radA Streptococcus pneumoniae D39

91.372

97.204

0.888
  radA Streptococcus pneumoniae R6

91.372

97.204

0.888
  radA Streptococcus pneumoniae TIGR4

91.372

97.204

0.888
  radA Streptococcus mitis SK321

91.372

97.204

0.888
  radA Streptococcus mitis NCTC 12261

91.15

97.204

0.886
  radA Bacillus subtilis subsp. subtilis str. 168

62.363

98.28

0.613

Multiple sequence alignment