Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FQR64_RS05790 Genome accession   NZ_CP042585
Coordinates   1092259..1092774 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain LD91-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087259..1097774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQR64_RS05745 (FQR64_05745) csrA 1087979..1088164 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FQR64_RS05775 (FQR64_05775) yqaB 1089489..1090055 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FQR64_RS05780 (FQR64_05780) yqaA 1090052..1090480 (+) 429 WP_001287457.1 YqaA family protein -
  FQR64_RS05785 (FQR64_05785) gshA 1090553..1092109 (+) 1557 WP_000611770.1 glutamate--cysteine ligase -
  FQR64_RS05790 (FQR64_05790) luxS 1092259..1092774 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  FQR64_RS05795 (FQR64_05795) emrB 1092838..1094376 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FQR64_RS05800 (FQR64_05800) emrA 1094393..1095565 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FQR64_RS05805 (FQR64_05805) emrR 1095692..1096222 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FQR64_RS05810 (FQR64_05810) ygaH 1096313..1096648 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FQR64_RS05815 (FQR64_05815) ygaZ 1096638..1097375 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=331747 FQR64_RS05790 WP_001130210.1 1092259..1092774(+) (luxS) [Escherichia coli strain LD91-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=331747 FQR64_RS05790 WP_001130210.1 1092259..1092774(+) (luxS) [Escherichia coli strain LD91-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737