Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   EJ378_RS18340 Genome accession   NZ_CP034541
Coordinates   3850677..3851630 (-) Length   317 a.a.
NCBI ID   WP_126429028.1    Uniprot ID   -
Organism   Brevibacillus marinus strain SCSIO 07484     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3845677..3856630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJ378_RS18320 - 3846840..3847697 (+) 858 WP_126429020.1 LysR family transcriptional regulator -
  EJ378_RS18325 - 3847773..3848786 (-) 1014 WP_126429022.1 siderophore ABC transporter substrate-binding protein -
  EJ378_RS18330 - 3848985..3849743 (-) 759 WP_126429024.1 ABC transporter ATP-binding protein -
  EJ378_RS18335 - 3849737..3850687 (-) 951 WP_126429026.1 iron chelate uptake ABC transporter family permease subunit -
  EJ378_RS18340 ceuB 3850677..3851630 (-) 954 WP_126429028.1 ABC transporter permease Machinery gene
  EJ378_RS18345 - 3851880..3852323 (-) 444 WP_126429030.1 Hsp20/alpha crystallin family protein -
  EJ378_RS18350 - 3852572..3854158 (+) 1587 WP_126429032.1 family 10 glycosylhydrolase -
  EJ378_RS18355 gdhA 3854296..3855678 (+) 1383 WP_126429034.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34878.35 Da        Isoelectric Point: 10.1558

>NTDB_id=331741 EJ378_RS18340 WP_126429028.1 3850677..3851630(-) (ceuB) [Brevibacillus marinus strain SCSIO 07484]
MKKRYLVAALLVLSFVSLFVGVKDLSPLDIFSLSEEQAQILFVSRLPRLISIIVAGVSMSVIGLIMQQLSRNKFVSPTTA
GTLDSARLGVLVAMLLFTSATPMQKMLVAFVFALLGTFLFMKILEKVKYKDAIFIPLVGLMFGNIVSALTTFLAYKYNLI
QNIAAWLHGDFSMIMKGRYELILISLPLMVIAYLYANRFTIAGMGEEFSINLGLNYKQVVNIGLAIVALVTAVVVLTVGI
LPFLGLIIPNIVSIYNGDNLKKNLSHTALLGAVFLLFCDILGRLIIFPYEISIGLMVGVIGSGIFLYLLMRRRAYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=331741 EJ378_RS18340 WP_126429028.1 3850677..3851630(-) (ceuB) [Brevibacillus marinus strain SCSIO 07484]
ATGAAAAAGAGATACTTGGTTGCAGCGTTGCTTGTCCTGTCGTTTGTCTCGCTCTTTGTCGGGGTGAAGGATCTCAGTCC
GCTGGACATCTTCAGCTTGAGCGAGGAGCAGGCGCAGATCTTGTTCGTCAGCAGGCTGCCGCGCTTGATCAGCATCATCG
TCGCGGGCGTCAGCATGAGCGTCATCGGCCTGATCATGCAGCAGTTGAGCCGCAACAAATTCGTCTCGCCCACTACCGCC
GGGACGCTGGATTCCGCCCGCTTGGGCGTGCTGGTGGCCATGCTGCTGTTTACGTCGGCGACACCGATGCAGAAGATGCT
GGTGGCCTTCGTCTTTGCCCTGCTGGGGACGTTCTTATTTATGAAGATTCTGGAGAAAGTCAAGTACAAGGATGCGATTT
TCATCCCGCTGGTCGGGTTGATGTTTGGCAATATCGTCAGTGCGCTGACCACGTTCCTGGCGTATAAATACAACCTGATT
CAAAACATTGCTGCCTGGCTGCACGGGGATTTTTCGATGATCATGAAAGGGCGGTATGAGCTGATCCTGATCAGTCTGCC
GCTGATGGTGATTGCCTATCTGTACGCCAATCGCTTTACCATCGCCGGGATGGGGGAGGAGTTCTCGATCAACCTGGGGC
TGAACTACAAACAAGTGGTGAACATCGGGTTGGCGATTGTCGCGCTGGTCACCGCGGTTGTTGTCCTGACAGTAGGGATT
CTGCCCTTTTTGGGCCTGATCATCCCGAACATCGTCTCGATTTACAACGGCGACAATCTGAAGAAAAACTTGTCCCACAC
CGCTCTATTGGGAGCCGTCTTTCTCTTGTTCTGCGACATCTTGGGCCGGTTGATCATCTTTCCTTACGAGATTTCGATCG
GCCTGATGGTGGGCGTAATCGGCAGCGGCATCTTTCTTTACTTGCTGATGAGGAGACGGGCGTATGGGTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.396

98.738

0.517

Multiple sequence alignment