Detailed information NTG0331716

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: EJ378_RS00885
• Genome accession: NZ_CP034541
• Coordinates: 180578..181945 (+)
• Length: 455 a.a.
• NCBI ID: WP_126424750.1
• Uniprot ID: -
• Organism: Brevibacillus marinus strain SCSIO 07484
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 175578..186945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJ378_RS00865	-	175839..176303 (+)	465	WP_126424747.1	CtsR family transcriptional regulator	-
EJ378_RS00870	-	176319..176852 (+)	534	WP_126424748.1	UvrB/UvrC motif-containing protein	-
EJ378_RS00875	-	176871..177938 (+)	1068	WP_126424749.1	protein arginine kinase	-
EJ378_RS00880	-	177978..180437 (+)	2460	WP_126429270.1	ATP-dependent Clp protease ATP-binding subunit	-
EJ378_RS00885	radA	180578..181945 (+)	1368	WP_126424750.1	DNA repair protein RadA	Machinery gene
EJ378_RS00890	disA	181949..183025 (+)	1077	WP_126424751.1	DNA integrity scanning diadenylate cyclase DisA	-
EJ378_RS00895	pssA	183146..183874 (+)	729	WP_126424752.1	CDP-diacylglycerol--serine O-phosphatidyltransferase	-
EJ378_RS00900	-	184263..185354 (+)	1092	WP_126424753.1	PIN/TRAM domain-containing protein	-
EJ378_RS00905	ispD	185379..186074 (+)	696	WP_126424754.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EJ378_RS00910	ispF	186074..186550 (+)	477	WP_126424755.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49291.80 Da
• Isoelectric Point: 6.6184

>NTDB_id=331716 EJ378_RS00885 WP_126424750.1 180578..181945(+) (radA) [Brevibacillus marinus strain SCSIO 07484]
MAKYKTKYACQECGYESPKWMGKCPGCGLWNTMVEELVQQSSLAGPKSTSPARRTAQPITEVKSEDEPRFDTNMNELNRV
LGGGLVPGSLILVGGDPGIGKSTLLLQTSFALAGQGHKVLYVSGEESAKQIKLRAERLAMQSPQLFVVSETDLTLIEEQI
EQVDPAVLIVDSIQTVFHPAVASAAGSVAQVRETTAQLMRIAKGKGIATFIVGHVTKEGAIAGPRMLEHMVDAVLYFEGE
RHNTFRILRAVKNRFGSTNEMGIFEMKDRGLEEVSNPSEIFLAERPIGVAGSTVVASMEGTRPVLVELQALVSPSSFVTP
RRMATGVDHQRVSMIMAVLEKRVGLMLQNQDAYVNVAGGVRLDEPAVDLAIAVSIASSFREQATHPQDVVIGEVGLTGEV
RGVSRIEQRIREAQKLGFTRVIIPKKNVRGLDVPPGIEIVGVSNIEEALREVLRG

Nucleotide

• Length: 1368 bp

>NTDB_id=331716 EJ378_RS00885 WP_126424750.1 180578..181945(+) (radA) [Brevibacillus marinus strain SCSIO 07484]
ATGGCAAAGTATAAAACGAAATACGCTTGTCAAGAGTGTGGCTACGAATCGCCCAAATGGATGGGAAAGTGTCCGGGATG
CGGCTTGTGGAATACAATGGTGGAGGAATTGGTCCAGCAGTCTTCGCTTGCCGGTCCCAAGAGTACCTCCCCTGCGAGAC
GGACCGCACAGCCGATCACCGAAGTGAAAAGCGAGGATGAGCCCCGGTTTGATACCAATATGAACGAGTTAAACCGCGTG
CTCGGCGGCGGTTTGGTTCCGGGATCGCTGATCCTCGTCGGCGGCGACCCGGGGATCGGCAAGTCAACGCTGCTGCTGCA
AACCTCGTTTGCCTTGGCCGGCCAGGGACATAAAGTGCTGTACGTATCCGGCGAAGAGTCGGCCAAGCAGATCAAGCTGC
GGGCCGAGCGTCTGGCCATGCAGTCACCCCAGCTGTTTGTCGTGTCGGAGACTGATCTGACGCTGATTGAGGAACAGATT
GAGCAGGTTGACCCTGCCGTGCTGATCGTCGATTCGATTCAAACCGTGTTCCATCCCGCTGTCGCTTCGGCTGCGGGGAG
CGTTGCGCAGGTGCGGGAGACGACCGCTCAGTTGATGCGGATCGCCAAAGGAAAAGGGATTGCGACGTTTATCGTCGGTC
ACGTCACCAAGGAAGGGGCGATCGCCGGACCGCGCATGCTGGAACACATGGTGGATGCCGTTTTATATTTTGAGGGCGAA
CGCCACAACACATTTCGCATCCTGCGCGCTGTAAAAAATCGGTTTGGCTCGACGAACGAGATGGGTATCTTTGAAATGAA
AGACCGCGGGTTGGAGGAAGTATCCAACCCTTCTGAAATTTTCCTCGCAGAGCGCCCGATCGGCGTCGCCGGTTCAACCG
TCGTGGCCAGTATGGAAGGGACAAGGCCTGTACTGGTGGAACTGCAGGCGCTTGTCTCGCCATCCAGTTTTGTCACCCCG
CGCCGCATGGCAACGGGGGTTGACCATCAGCGGGTCTCGATGATCATGGCCGTCTTGGAAAAGCGGGTCGGACTGATGCT
GCAGAATCAGGATGCCTATGTCAACGTAGCGGGAGGCGTTCGTCTCGATGAGCCGGCGGTCGATCTGGCGATAGCTGTCA
GTATTGCCAGCAGTTTTCGTGAACAGGCCACCCACCCGCAAGATGTGGTGATCGGCGAGGTGGGGCTGACGGGGGAAGTG
CGCGGGGTCTCGCGGATCGAGCAGCGCATCCGGGAAGCGCAAAAATTAGGATTTACACGAGTGATCATACCGAAAAAAAA
CGTTCGCGGTTTGGACGTCCCACCAGGAATTGAAATCGTCGGGGTGAGCAATATTGAAGAGGCTCTGCGGGAAGTGTTAA
GGGGGTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (62-219)

• Subunit ChlI of Mg-chelatase (ChlI) (338-427)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	66.594	100	0.67
radA	Streptococcus pneumoniae Rx1	58.057	99.56	0.578
radA	Streptococcus pneumoniae D39	58.057	99.56	0.578
radA	Streptococcus pneumoniae R6	58.057	99.56	0.578
radA	Streptococcus pneumoniae TIGR4	58.057	99.56	0.578
radA	Streptococcus mitis NCTC 12261	58.057	99.56	0.578
radA	Streptococcus mitis SK321	58.057	99.56	0.578