Detailed information NTG0331692

Bioinformatically predicted

Overview

• Name: degU
• Type: Regulator
• Locus tag: EJJ34_RS19330
• Genome accession: NZ_CP034484
• Coordinates: 3639828..3640517 (-)
• Length: 229 a.a.
• NCBI ID: WP_003219701.1
• Uniprot ID: G4P1D5
• Organism: Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610
• Function: activation of comK (predicted from homology) Competence regulation

Genomic Context

Location: 3634828..3645517

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJJ34_RS19295 (EJJ34_19300)	flgN	3635008..3635490 (-)	483	WP_003227999.1	flagellar protein FlgN	-
EJJ34_RS19300 (EJJ34_19305)	flgM	3635506..3635772 (-)	267	WP_003227997.1	flagellar biosynthesis anti-sigma factor FlgM	-
EJJ34_RS19305 (EJJ34_19310)	yvyF	3635853..3636272 (-)	420	WP_003227995.1	TIGR03826 family flagellar region protein	-
EJJ34_RS19310 (EJJ34_19315)	comFC	3636346..3637068 (-)	723	WP_003227991.1	comF operon protein ComFC	Machinery gene
EJJ34_RS19315 (EJJ34_19320)	comFB	3637032..3637328 (-)	297	WP_003227989.1	late competence protein ComFB	-
EJJ34_RS19320 (EJJ34_19325)	comFA	3637388..3638779 (-)	1392	WP_003243962.1	ATP-dependent helicase ComFA	Machinery gene
EJJ34_RS19325 (EJJ34_19330)	fakBA	3638885..3639730 (-)	846	WP_003244125.1	DegV family protein	-
EJJ34_RS19330 (EJJ34_19335)	degU	3639828..3640517 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
EJJ34_RS19335 (EJJ34_19340)	degS	3640600..3641757 (-)	1158	WP_003227983.1	two-component sensor histidine kinase DegS	Regulator
EJJ34_RS19340 (EJJ34_19345)	yvyE	3641974..3642627 (+)	654	WP_003227979.1	YigZ family protein	-
EJJ34_RS19345 (EJJ34_19350)	tagV	3642627..3643802 (+)	1176	WP_003244117.1	polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV	-
EJJ34_RS19350 (EJJ34_19355)	tagO	3643875..3644951 (-)	1077	WP_003227975.1	MraY family glycosyltransferase	-

Sequence

Protein

• Length: 229 a.a.
• Molecular weight: 25866.57 Da
• Isoelectric Point: 5.9446

>NTDB_id=331692 EJJ34_RS19330 WP_003219701.1 3639828..3640517(-) (degU) [Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide

• Length: 690 bp

>NTDB_id=331692 EJJ34_RS19330 WP_003219701.1 3639828..3640517(-) (degU) [Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, luxR family (GerE) (165-220)

• Response regulator receiver domain (Response_reg) (6-118)

3D structure

• AlphaFold DB: G4P1D5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degU	Bacillus subtilis subsp. subtilis str. 168	100	100	1