Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   FR761_RS08905 Genome accession   NZ_CP042556
Coordinates   1861211..1861846 (+) Length   211 a.a.
NCBI ID   WP_000264042.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain E47     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1856211..1866846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR761_RS08880 (FR761_08880) - 1857052..1858065 (+) 1014 WP_002125078.1 aminoglycoside phosphotransferase family protein -
  FR761_RS08885 (FR761_08885) murU 1858065..1858754 (+) 690 WP_038341982.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  FR761_RS08890 (FR761_08890) rsmG 1858842..1859474 (+) 633 WP_002125081.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  FR761_RS08895 (FR761_08895) - 1859496..1860278 (+) 783 WP_000057212.1 ParA family protein -
  FR761_RS08900 (FR761_08900) - 1860275..1861162 (+) 888 WP_002125083.1 ParB/RepB/Spo0J family partition protein -
  FR761_RS08905 (FR761_08905) exbB 1861211..1861846 (+) 636 WP_000264042.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FR761_RS08910 (FR761_08910) - 1861862..1862290 (+) 429 WP_000669681.1 ExbD/TolR family protein -
  FR761_RS08915 (FR761_08915) msbA 1862287..1864014 (+) 1728 WP_001070738.1 lipid A export permease/ATP-binding protein MsbA -
  FR761_RS08920 (FR761_08920) lpxK 1864017..1865027 (+) 1011 WP_000050451.1 tetraacyldisaccharide 4'-kinase -
  FR761_RS08925 (FR761_08925) kdsB 1865038..1865799 (+) 762 WP_000680704.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FR761_RS08930 (FR761_08930) - 1865811..1866791 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23224.13 Da        Isoelectric Point: 6.2379

>NTDB_id=331678 FR761_RS08905 WP_000264042.1 1861211..1861846(+) (exbB) [Acinetobacter baumannii strain E47]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEYQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=331678 FR761_RS08905 WP_000264042.1 1861211..1861846(+) (exbB) [Acinetobacter baumannii strain E47]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TTATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGTATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGAACCTTAAGTGCTATTGCGCCTTTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCGCTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment