Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   FGL73_RS12920 Genome accession   NZ_CP042408
Coordinates   339799..340794 (+) Length   331 a.a.
NCBI ID   WP_375710658.1    Uniprot ID   -
Organism   Lactococcus lactis strain CBA3619     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 334799..345794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL73_RS01645 (FGL73_01645) rpsA 335758..336984 (+) 1227 WP_003132594.1 30S ribosomal protein S1 -
  FGL73_RS01650 (FGL73_01650) - 337135..337851 (+) 717 WP_038600055.1 nucleoside phosphorylase -
  FGL73_RS01655 (FGL73_01655) pnuC 337980..338693 (+) 714 WP_012897492.1 nicotinamide riboside transporter PnuC -
  FGL73_RS12915 uvrC 338788..339750 (+) 963 Protein_326 excinuclease ABC subunit UvrC -
  FGL73_RS12920 uvrC 339799..340794 (+) 996 WP_375710658.1 hypothetical protein Machinery gene
  FGL73_RS01665 (FGL73_01665) mutY 340958..342121 (+) 1164 WP_146977924.1 A/G-specific adenine glycosylase -
  FGL73_RS01670 (FGL73_01670) pepV 342187..343605 (+) 1419 WP_038600061.1 dipeptidase PepV -
  FGL73_RS01675 (FGL73_01675) acpS 343708..344067 (+) 360 WP_021468491.1 holo-ACP synthase -
  FGL73_RS01680 (FGL73_01680) alr 344112..345215 (+) 1104 WP_146977925.1 alanine racemase -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 36997.77 Da        Isoelectric Point: 10.1706

>NTDB_id=331643 FGL73_RS12920 WP_375710658.1 339799..340794(+) (uvrC) [Lactococcus lactis strain CBA3619]
MDAKVFTAKTLKFSDQKDVEQSIVKLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDIL
KTTKAVENLGKILGIPKPVRIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKTVVGADDYASMREVMTRRYSRAL
KEETPLPDLIAMDGGAGQVNIAKQVLKELGLSIPVAGMQKNDKHQTSELLFGDPLDVVPLSRQSQEFFLLTRIQDEVHRF
AITFHRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEAGIPYEVAERVKTTLSGPIQENENWESL
KDNVPLLEGKK

Nucleotide


Download         Length: 996 bp        

>NTDB_id=331643 FGL73_RS12920 WP_375710658.1 339799..340794(+) (uvrC) [Lactococcus lactis strain CBA3619]
GTGGATGCAAAAGTTTTTACGGCCAAGACGCTTAAATTTTCTGATCAAAAAGATGTTGAGCAATCAATTGTTAAACTTGA
TAAAGAATTATCAGCCGAAAAACGTTTATCATCACTTTTAGCTAAAACACAGATTGTTCAACCAAGCCGTGGTGAGAAAA
AACAATTGGTTAATATGGCAACTAAGAATGCTCAAAGTCAATTACAATTGAAATTTGATGTGGCTGAGCGTGATATTTTG
AAAACAACTAAAGCAGTTGAAAACTTGGGTAAAATTTTGGGAATACCAAAACCTGTAAGAATTGAGTCTTTTGATAATTC
AAATATTATGGGGACTTCACCAGTATCTGCAATGGTTGTTTTTATTGATGGAAAACCTTCAAAAAAAGATTATCGGAAAT
ATAAAATTAAAACAGTGGTTGGTGCGGATGACTATGCTTCAATGCGCGAGGTGATGACGAGACGTTATTCACGAGCTTTA
AAAGAAGAAACGCCTCTTCCTGATTTGATTGCAATGGATGGTGGAGCTGGTCAAGTTAACATTGCCAAGCAAGTTTTAAA
AGAGCTTGGGCTATCAATCCCGGTTGCTGGGATGCAAAAAAATGATAAGCACCAAACGTCAGAATTACTTTTTGGTGACC
CTTTAGACGTGGTTCCCTTGTCAAGACAATCTCAAGAATTCTTTTTGCTGACAAGAATTCAAGATGAGGTTCACCGTTTT
GCGATTACATTCCATAGACAACTACGTGGTAAAAATACATTTTCAAGTAAATTGGACGGTATTGTTGGACTTGGTCCAAA
ACGAAAACAAAAGTTACTGACAACTTTCAAAAATTTGAAAGCAATTGAAGAGGCAAGTGTACAAGAAGTGGCAGAAGCTG
GTATTCCTTATGAAGTAGCAGAGCGTGTGAAAACAACTTTGTCTGGACCAATTCAAGAAAATGAAAATTGGGAATCACTC
AAGGATAATGTTCCTCTTTTAGAAGGTAAAAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(92-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

70.741

81.571

0.577
  uvrC Streptococcus pneumoniae D39

70.741

81.571

0.577
  uvrC Streptococcus pneumoniae TIGR4

70.741

81.571

0.577

Multiple sequence alignment