Detailed information NTG0331576

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: D1629_RS01820
• Genome accession: NZ_CP034474
• Coordinates: 396382..397764 (+)
• Length: 460 a.a.
• NCBI ID: WP_010253610.1
• Uniprot ID: -
• Organism: Pantoea agglomerans strain CFSAN047154
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 391382..402764

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D1629_RS01790 (D1629_01790)	-	392451..392861 (+)	411	WP_010671714.1	DNA polymerase III subunit psi	-
D1629_RS01795 (D1629_01795)	rimI	392833..393273 (+)	441	WP_010671713.1	ribosomal protein S18-alanine N-acetyltransferase	-
D1629_RS01800 (D1629_01800)	yjjG	393292..393972 (+)	681	WP_129062777.1	pyrimidine 5'-nucleotidase	-
D1629_RS01810 (D1629_01810)	-	394633..395283 (-)	651	WP_010253606.1	YtjB family periplasmic protein	-
D1629_RS01815 (D1629_01815)	serB	395391..396368 (+)	978	WP_033770935.1	phosphoserine phosphatase	-
D1629_RS01820 (D1629_01820)	radA	396382..397764 (+)	1383	WP_010253610.1	DNA repair protein RadA	Machinery gene
D1629_RS01825 (D1629_01825)	nadR	397840..399081 (+)	1242	WP_010253612.1	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	-
D1629_RS01830 (D1629_01830)	-	399127..400128 (-)	1002	WP_033756486.1	zinc-binding alcohol dehydrogenase family protein	-
D1629_RS01835 (D1629_01835)	-	400333..401229 (+)	897	WP_129062778.1	LysR family transcriptional regulator	-
D1629_RS01840 (D1629_01840)	-	401210..401812 (-)	603	WP_089414589.1	putative adenosine monophosphate-protein transferase Fic	-
D1629_RS01845 (D1629_01845)	-	401825..401989 (-)	165	WP_109652447.1	YhfG family protein	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 49321.96 Da
• Isoelectric Point: 7.4220

>NTDB_id=331576 D1629_RS01820 WP_010253610.1 396382..397764(+) (radA) [Pantoea agglomerans strain CFSAN047154]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAILDDL

Nucleotide

• Length: 1383 bp

>NTDB_id=331576 D1629_RS01820 WP_010253610.1 396382..397764(+) (radA) [Pantoea agglomerans strain CFSAN047154]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAATGTGGCGCAGATTACCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAACACCATCACCGAGGTGCGCATTGCCGCCTCGCCCGCGGCTGCGCGTAACGAGCGCCTGAGTGGCT
ATGCTGGCAGCGCCGGCACCAGCCGGGTGCAGAAGCTCTCTGAAATCAGCCTGGAGGCGTTACCGCGCTTCTCGACCAGC
TTCAAAGAGTTTGACCGGGTGCTGGGCGGCGGGGTGGTGCCGGGCAGCGCCATTCTGATTGGCGGCAGCCCCGGAGCAGG
CAAATCCACGCTGCTGCTGCAGGTGATGTGCCGGTTGTCAGAGGGGATGAAAACCCTGTATGTCACCGGTGAAGAGTCAC
TGCAGCAGGTGGCGATGCGCGCCCATCGTCTGGGATTACCCACCGAAAATGTGAATATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATTGCCGAACAGGAGCAGCCGCAACTGATGGTGATCGACTCGATCCAGGTAATGCACATGGCGGAAAT
CCAGTCATCGCCCGGCAGCGTCGCCCAGGTGCGTGAAACCGCCGCTTACCTGACGCGCTTCGCCAAGACGCGCGGCGTGG
CGATCATCATGGTCGGTCACGTCACCAAAGATGGCTCCCTGGCCGGACCGAAAGTGCTGGAGCACTGTATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGTCATAAAAACCGCTTCGGCGCGGTCAATGAACT
GGGTGTGTTTGCCATGACCGAGCAGGGCATGCGTGAAGTCAGCAACCCGTCAGCTATTTTCCTGTCGCGCGGCGAAGAGA
TCACCTCGGGCAGTTCGGTGATGGTGCTGTGGGAGGGAACGCGACCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCCATGATGGGCAATCCACGCCGCGTGGCAGTGGGTCTGGAGCAGAACCGCCTGGCGATTCTGCTGGCAGTATTGCACCG
TCACGGCGGATTGCAGATGGCGGATCAGGATGTGTTCGTTAACGTGGTCGGCGGCGTCAAAGTCACCGAAACCAGTGCAG
ACCTGGCGCTGATGCTGTCGATGGTGTCGAGCCTGCGCGATCGTCCGTTGCCGCAGGATCTGGTGATCTTCGGCGAAGTG
GGACTGGCGGGCGAAATCCGTCCGGTGCCCAGCGGTCAGGAGCGCATCGCTGAAGCGGCGAAGCATGGCTTCAAACGCGC
CATTGTGCCGGCAGGGAATGCACCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAGAAGCTGGCCGATGCGC
TGGCGATTCTGGACGATCTGTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (347-433)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-36)

• AAA domain (AAA_25) (87-225)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.373	100	0.485
radA	Streptococcus mitis NCTC 12261	44.82	96.522	0.433
radA	Streptococcus pneumoniae Rx1	45.244	93.696	0.424
radA	Streptococcus pneumoniae D39	45.244	93.696	0.424
radA	Streptococcus pneumoniae R6	45.244	93.696	0.424
radA	Streptococcus pneumoniae TIGR4	45.244	93.696	0.424
radA	Streptococcus mitis SK321	45.244	93.696	0.424